Variant report

Variant	rs28568871
Chromosome Location	chr3:85398143-85398144
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11918831	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11922348	1.00[AMR][1000 genomes]
rs11929389	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1449392	1.00[AMR][1000 genomes]
rs17022773	0.93[AFR][1000 genomes]
rs17022855	1.00[AMR][1000 genomes]
rs17022902	1.00[AMR][1000 genomes]
rs17022958	1.00[AMR][1000 genomes]
rs56825201	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57611991	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58154502	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58690958	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59142599	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60012465	1.00[AMR][1000 genomes]
rs60195286	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6781652	1.00[AMR][1000 genomes]
rs72903276	1.00[AMR][1000 genomes]
rs72903287	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72905414	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72905427	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72905447	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72905453	1.00[AMR][1000 genomes]
rs72905457	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72905465	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72905468	0.81[AFR][1000 genomes]
rs72905473	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72905474	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72905475	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72905480	0.91[AFR][1000 genomes]
rs72905486	0.93[AFR][1000 genomes]
rs72905492	0.93[AFR][1000 genomes]
rs72905493	0.93[AFR][1000 genomes]
rs72907245	0.90[AFR][1000 genomes]
rs72909215	1.00[AMR][1000 genomes]
rs72909239	1.00[AMR][1000 genomes]
rs72909241	1.00[AMR][1000 genomes]
rs72909262	1.00[AMR][1000 genomes]
rs72909263	1.00[AMR][1000 genomes]
rs7613186	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7626074	1.00[AMR][1000 genomes]
rs7636650	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3419993	chr3:85030343-85663403	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
2	esv2753915	chr3:85071410-85624810	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1012601	chr3:85246185-85426996	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv536618	chr3:85246185-85426996	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv948806	chr3:85304744-85463443	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1013407	chr3:85307022-85460325	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
7	nsv870153	chr3:85326695-85426936	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1002238	chr3:85357855-85719373	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
9	nsv536619	chr3:85357855-85719373	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
10	nsv1008956	chr3:85394816-85460325	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
11	nsv536620	chr3:85394816-85460325	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
12	nsv1004254	chr3:85394816-85514910	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
13	nsv536621	chr3:85394816-85514910	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:85397800-85398200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr3:85397800-85398400	Enhancers	Muscle Satellite Cultured Cells	--

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