Variant report
| Variant | rs72907578 |
|---|---|
| Chromosome Location | chr11:32398660-32398661 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr11:32397666..32400035-chr11:32435330..32437389,2 | K562 | blood: | |
| 2 | chr11:32394227..32397866-chr11:32398063..32404136,7 | K562 | blood: | |
| 3 | chr11:32396138..32399032-chr11:32408436..32411201,2 | K562 | blood: | |
| 4 | chr11:32396013..32398929-chr11:32913872..32916458,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000060749 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs5030267 | 0.81[AMR][1000 genomes] |
| rs5030276 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs5030308 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs5030309 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs5030322 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs5030331 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72907570 | 1.00[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs72907573 | 1.00[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs72907575 | 1.00[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs72907581 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72907582 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72907585 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72907590 | 1.00[EUR][1000 genomes] |
| rs72907594 | 1.00[EUR][1000 genomes] |
| rs72907595 | 1.00[EUR][1000 genomes] |
| rs72907600 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72907602 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832108 | chr11:32395937-32560583 | Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:32396400-32407800 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
