Variant report

Variant	rs72907602
Chromosome Location	chr11:32407896-32407897
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:32407039..32411612-chr11:32452457..32458118,5	K562	blood:
2	chr11:32407255..32408618-chr11:32583158..32583976,3	MCF-7	breast:
3	chr11:32407234..32408158-chr11:32636750..32637629,2	MCF-7	breast:
4	chr11:32407611..32410379-chr11:32410899..32412970,3	K562	blood:
5	chr11:32407695..32408684-chr11:32469407..32470404,2	MCF-7	breast:
6	chr11:32407201..32409874-chr11:32413838..32416426,2	K562	blood:
7	chr11:32406459..32408539-chr11:32455882..32458118,2	K562	blood:
8	chr11:32405231..32409162-chr11:32605421..32608022,3	K562	blood:
9	chr11:32407819..32409991-chr11:32606455..32608332,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000183242	Chromatin interaction
ENSG00000184937	Chromatin interaction
ENSG00000149100	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs5030267	0.81[AMR][1000 genomes]
rs5030276	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs5030308	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs5030309	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs5030322	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs5030331	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72907570	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72907573	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72907575	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72907578	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72907581	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72907582	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72907585	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72907590	1.00[EUR][1000 genomes]
rs72907594	1.00[EUR][1000 genomes]
rs72907595	1.00[EUR][1000 genomes]
rs72907600	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832108	chr11:32395937-32560583	Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32403200-32411800	Weak transcription	Spleen	Spleen
2	chr11:32404000-32411800	Weak transcription	Right Ventricle	heart
3	chr11:32405000-32409400	Strong transcription	Fetal Kidney	kidney
4	chr11:32405600-32408000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr11:32406000-32412800	Genic enhancers	Dnd41	blood
6	chr11:32406600-32411400	Weak transcription	Ovary	ovary
7	chr11:32407200-32408000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr11:32407400-32408000	Enhancers	Rectal Smooth Muscle	rectum
9	chr11:32407400-32408000	Genic enhancers	K562	blood
10	chr11:32407400-32408800	Enhancers	Placenta Amnion	Placenta Amnion
11	chr11:32407400-32409600	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr11:32407600-32409600	Enhancers	Primary hematopoietic stem cells	blood
13	chr11:32407800-32408000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr11:32407800-32408200	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr11:32407800-32408200	Enhancers	H1 Cell Line	embryonic stem cell
16	chr11:32407800-32408200	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr11:32407800-32408200	Enhancers	Duodenum Smooth Muscle	Duodenum
18	chr11:32407800-32408200	Enhancers	HMEC	breast
19	chr11:32407800-32408400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr11:32407800-32408400	Flanking Active TSS	Fetal Heart	heart
21	chr11:32407800-32408400	Bivalent Enhancer	Hela-S3	cervix
22	chr11:32407800-32408400	Enhancers	HUVEC	blood vessel
23	chr11:32407800-32408600	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr11:32407800-32408600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
25	chr11:32407800-32408600	Enhancers	Left Ventricle	heart
26	chr11:32407800-32408800	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr11:32407800-32409200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr11:32407800-32409400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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