Variant report

Variant	rs72911084
Chromosome Location	chr3:28619509-28619510
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs60406047	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6790848	1.00[EUR][1000 genomes]
rs72894714	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72894734	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72901740	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72901748	0.86[AFR][1000 genomes]
rs72909019	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72911056	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72911081	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3328565	chr3:27991169-28915035	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv876649	chr3:28126595-28718454	Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv1015015	chr3:28461972-28728494	Bivalent/Poised TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv916364	chr3:28468275-29146280	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv590010	chr3:28469830-28727214	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:28618200-28619600	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
2	chr3:28618200-28631200	Weak transcription	Psoas Muscle	Psoas
3	chr3:28618400-28619600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr3:28618400-28619600	Bivalent Enhancer	Fetal Brain Male	brain
5	chr3:28618600-28619600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:28618600-28619800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr3:28618600-28619800	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
8	chr3:28618600-28619800	Active TSS	Fetal Adrenal Gland	Adrenal Gland
9	chr3:28618600-28627800	Weak transcription	Aorta	Aorta
10	chr3:28618800-28619800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
11	chr3:28619000-28619600	Weak transcription	Brain Substantia Nigra	brain
12	chr3:28619000-28619800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
13	chr3:28619200-28619600	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr3:28619200-28619800	Enhancers	H1 Cell Line	embryonic stem cell
15	chr3:28619200-28619800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
16	chr3:28619400-28619600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr3:28619400-28619800	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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