Variant report
Variant | rs72909019 |
---|---|
Chromosome Location | chr3:28468627-28468628 |
allele | A/C |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr3:28388140..28390737-chr3:28466341..28468815,2 | K562 | blood: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000163512 | Chromatin interaction |
ENSG00000206559 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs58333674 | 1.00[AMR][1000 genomes] |
rs60375581 | 1.00[AMR][1000 genomes] |
rs60406047 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs6801397 | 1.00[AMR][1000 genomes] |
rs72894714 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs72894734 | 1.00[AMR][1000 genomes] |
rs72895990 | 1.00[AMR][1000 genomes] |
rs72897806 | 1.00[AMR][1000 genomes] |
rs72897817 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs72897819 | 1.00[AMR][1000 genomes] |
rs72897831 | 1.00[AMR][1000 genomes] |
rs72897837 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs72897852 | 1.00[AMR][1000 genomes] |
rs72897867 | 1.00[AMR][1000 genomes] |
rs72897875 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs72898257 | 1.00[AMR][1000 genomes] |
rs72898270 | 1.00[AMR][1000 genomes] |
rs72898272 | 1.00[AMR][1000 genomes] |
rs72898275 | 1.00[AMR][1000 genomes] |
rs72898277 | 1.00[AMR][1000 genomes] |
rs72898280 | 1.00[AMR][1000 genomes] |
rs72898284 | 1.00[AMR][1000 genomes] |
rs72898286 | 1.00[AMR][1000 genomes] |
rs72898289 | 1.00[AMR][1000 genomes] |
rs72899874 | 1.00[AMR][1000 genomes] |
rs72901740 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs72901748 | 1.00[AFR][1000 genomes] |
rs72911056 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs72911081 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs72911084 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | esv3328565 | chr3:27991169-28915035 | Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 28 gene(s) | inside rSNPs | diseases |
2 | nsv876649 | chr3:28126595-28718454 | Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 27 gene(s) | inside rSNPs | diseases |
3 | nsv876650 | chr3:28427029-28613602 | Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
4 | nsv1015015 | chr3:28461972-28728494 | Bivalent/Poised TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
5 | nsv916364 | chr3:28468275-29146280 | Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr3:28461000-28470200 | Weak transcription | Ovary | ovary |
2 | chr3:28468400-28468800 | Enhancers | Colon Smooth Muscle | Colon |
3 | chr3:28468400-28469000 | Enhancers | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
4 | chr3:28468400-28469000 | Enhancers | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |