Variant report

Variant	rs72901740
Chromosome Location	chr3:28432589-28432590
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs58333674	1.00[AMR][1000 genomes]
rs60375581	1.00[AMR][1000 genomes]
rs60406047	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6801397	1.00[AMR][1000 genomes]
rs72894714	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72894734	1.00[AMR][1000 genomes]
rs72895990	1.00[AMR][1000 genomes]
rs72897806	1.00[AMR][1000 genomes]
rs72897817	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72897819	1.00[AMR][1000 genomes]
rs72897831	1.00[AMR][1000 genomes]
rs72897837	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72897852	1.00[AMR][1000 genomes]
rs72897867	1.00[AMR][1000 genomes]
rs72897875	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72898219	1.00[AMR][1000 genomes]
rs72898224	1.00[AMR][1000 genomes]
rs72898227	1.00[AMR][1000 genomes]
rs72898257	1.00[AMR][1000 genomes]
rs72898270	1.00[AMR][1000 genomes]
rs72898272	1.00[AMR][1000 genomes]
rs72898275	1.00[AMR][1000 genomes]
rs72898277	1.00[AMR][1000 genomes]
rs72898280	1.00[AMR][1000 genomes]
rs72898284	1.00[AMR][1000 genomes]
rs72898286	1.00[AMR][1000 genomes]
rs72898289	1.00[AMR][1000 genomes]
rs72899874	1.00[AMR][1000 genomes]
rs72901748	1.00[AFR][1000 genomes]
rs72909019	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72911056	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72911081	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72911084	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3328565	chr3:27991169-28915035	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv876649	chr3:28126595-28718454	Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv876650	chr3:28427029-28613602	Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:28420800-28433000	Weak transcription	Ovary	ovary
2	chr3:28426000-28433000	Weak transcription	Right Ventricle	heart
3	chr3:28431800-28434000	Weak transcription	Left Ventricle	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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