Variant report

Variant	rs72914810
Chromosome Location	chr3:85756209-85756210
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs57104325	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73142842	0.89[EUR][1000 genomes]
rs73142861	0.89[EUR][1000 genomes]
rs73142863	0.89[EUR][1000 genomes]
rs73142864	0.89[EUR][1000 genomes]
rs73143376	1.00[EUR][1000 genomes]
rs73143378	1.00[EUR][1000 genomes]
rs73143382	0.89[EUR][1000 genomes]
rs73147245	0.89[EUR][1000 genomes]
rs7652940	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv590905	chr3:85438564-85797093	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1010541	chr3:85505839-85870597	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv536625	chr3:85505839-85870597	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1005102	chr3:85729640-85829412	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:85753200-85756800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr3:85753200-85756800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr3:85753200-85756800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr3:85753200-85757000	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr3:85753600-85758600	Weak transcription	Brain Hippocampus Middle	brain
6	chr3:85754800-85757000	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr3:85755600-85759200	Weak transcription	Brain Germinal Matrix	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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