Variant report

Variant	rs73142842
Chromosome Location	chr3:85775566-85775567
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr3:85775378-85775899	MCF10A-Er-Src	breast:	n/a	chr3:85775721-85775728 chr3:85775720-85775728 chr3:85775718-85775725 chr3:85775719-85775729 chr3:85775718-85775730 chr3:85775720-85775729
2	FOXA1	chr3:85775425-85775797	HepG2	liver:	n/a	n/a
3	FOXA2	chr3:85775474-85775957	A549	lung:	n/a	n/a
4	TCF7L2	chr3:85775471-85776082	HepG2	liver:	n/a	chr3:85775720-85775729
5	TCF7L2	chr3:85775533-85775815	MCF-7	breast:	n/a	chr3:85775720-85775729
6	CEBPB	chr3:85775512-85775666	A549	lung:	n/a	n/a
7	ARID3A	chr3:85775448-85775854	HepG2	liver:	n/a	n/a
8	TCF7L2	chr3:85775368-85775908	HCT-116	colon:	n/a	chr3:85775720-85775729
9	JUN	chr3:85775452-85775932	HepG2	liver:	n/a	chr3:85775721-85775728 chr3:85775720-85775728 chr3:85775718-85775725 chr3:85775719-85775729 chr3:85775718-85775730 chr3:85775720-85775729
10	TEAD4	chr3:85775304-85775822	HepG2	liver:	n/a	chr3:85775436-85775445 chr3:85775400-85775409
11	FOS	chr3:85775309-85775896	MCF10A-Er-Src	breast:	n/a	chr3:85775721-85775728 chr3:85775720-85775728 chr3:85775718-85775725 chr3:85775719-85775729 chr3:85775718-85775730 chr3:85775720-85775729
12	FOXA1	chr3:85775455-85775919	HepG2	liver:	n/a	n/a
13	FOS	chr3:85775557-85775861	MCF10A-Er-Src	breast:	n/a	chr3:85775721-85775728 chr3:85775720-85775728 chr3:85775718-85775725 chr3:85775719-85775729 chr3:85775718-85775730 chr3:85775720-85775729
14	FOSL2	chr3:85775363-85775914	A549	lung:	n/a	chr3:85775719-85775730 chr3:85775721-85775728 chr3:85775720-85775728 chr3:85775718-85775725 chr3:85775719-85775729 chr3:85775718-85775730 chr3:85775720-85775729
15	FOXA1	chr3:85775529-85775947	HepG2	liver:	n/a	n/a
16	CEBPB	chr3:85775455-85775813	Hela-S3	cervix:	n/a	n/a
17	MAFK	chr3:85775548-85775833	HepG2	liver:	n/a	chr3:85775721-85775730 chr3:85775719-85775734
18	CEBPB	chr3:85775542-85775726	HepG2	liver:	n/a	n/a
19	JUND	chr3:85775463-85775910	HepG2	liver:	n/a	chr3:85775721-85775728 chr3:85775720-85775728 chr3:85775718-85775725 chr3:85775719-85775729 chr3:85775718-85775729 chr3:85775718-85775730 chr3:85775720-85775729
20	FOXA2	chr3:85775476-85775878	HepG2	liver:	n/a	n/a
21	JUND	chr3:85775509-85775895	Hela-S3	cervix:	n/a	chr3:85775721-85775728 chr3:85775720-85775728 chr3:85775718-85775725 chr3:85775719-85775729 chr3:85775718-85775729 chr3:85775718-85775730 chr3:85775720-85775729
22	JUND	chr3:85775200-85776057	SK-N-SH	brain:	n/a	chr3:85775721-85775728 chr3:85775720-85775728 chr3:85775718-85775725 chr3:85775719-85775729 chr3:85775718-85775729 chr3:85775718-85775730 chr3:85775720-85775729
23	FOSL2	chr3:85775558-85775827	HepG2	liver:	n/a	chr3:85775719-85775730 chr3:85775721-85775728 chr3:85775720-85775728 chr3:85775718-85775725 chr3:85775719-85775729 chr3:85775718-85775730 chr3:85775720-85775729
24	STAT3	chr3:85775428-85775614	MCF10A-Er-Src	breast:	n/a	n/a
25	TCF7L2	chr3:85775353-85775914	Hela-S3	cervix:	n/a	chr3:85775720-85775729
26	FOS	chr3:85775366-85775896	MCF10A-Er-Src	breast:	n/a	chr3:85775721-85775728 chr3:85775720-85775728 chr3:85775718-85775725 chr3:85775719-85775729 chr3:85775718-85775730 chr3:85775720-85775729
27	TCF7L2	chr3:85775472-85775970	Hela-S3	cervix:	n/a	chr3:85775720-85775729
28	FOXA1	chr3:85775431-85775914	HepG2	liver:	n/a	n/a
29	EP300	chr3:85775432-85775775	HepG2	liver:	n/a	chr3:85775720-85775729 chr3:85775708-85775718 chr3:85775719-85775728
30	FOSL2	chr3:85775474-85775915	HepG2	liver:	n/a	chr3:85775719-85775730 chr3:85775721-85775728 chr3:85775720-85775728 chr3:85775718-85775725 chr3:85775719-85775729 chr3:85775718-85775730 chr3:85775720-85775729
31	MAFK	chr3:85775534-85775851	HepG2	liver:	n/a	chr3:85775721-85775730 chr3:85775719-85775734
32	NFIC	chr3:85775474-85775812	HepG2	liver:	n/a	n/a
33	CEBPB	chr3:85775455-85775841	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
CADM2	TF binding region

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs57104325	0.89[EUR][1000 genomes]
rs72914810	0.89[EUR][1000 genomes]
rs73142859	0.87[EUR][1000 genomes]
rs73142861	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73142863	1.00[EUR][1000 genomes]
rs73142864	1.00[EUR][1000 genomes]
rs73143376	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73143378	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73143382	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73147245	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7652940	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv590905	chr3:85438564-85797093	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1010541	chr3:85505839-85870597	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv536625	chr3:85505839-85870597	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1005102	chr3:85729640-85829412	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:85774200-85777000	Enhancers	HMEC	breast
2	chr3:85774400-85776000	Enhancers	Muscle Satellite Cultured Cells	--
3	chr3:85774600-85776000	Enhancers	HepG2	liver
4	chr3:85774600-85776200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr3:85774600-85777600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr3:85775000-85775600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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