Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs4328241	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4329718	0.94[EUR][1000 genomes]
rs4331136	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4401107	0.94[EUR][1000 genomes]
rs4603334	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4623931	0.94[EUR][1000 genomes]
rs56055402	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72916011	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72916012	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72916016	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72916027	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72916029	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72916032	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72916036	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72916048	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72916073	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72916076	0.94[EUR][1000 genomes]
rs72916077	0.94[EUR][1000 genomes]
rs72916085	0.94[EUR][1000 genomes]
rs72916088	0.94[EUR][1000 genomes]
rs72916089	0.94[EUR][1000 genomes]
rs72916090	0.94[EUR][1000 genomes]
rs72916093	0.94[EUR][1000 genomes]
rs73953641	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909616	chr18:45467806-45844500	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1066479	chr18:45505569-45554507	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1055669	chr18:45513090-45559375	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45509200-45514800	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr18:45510400-45523600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr18:45510600-45522000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr18:45510800-45515400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr18:45510800-45515600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr18:45511000-45515600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr18:45511200-45515600	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr18:45511800-45515600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr18:45513000-45515000	Enhancers	Hela-S3	cervix
10	chr18:45513800-45515200	Weak transcription	Fetal Muscle Leg	muscle
11	chr18:45514000-45521800	Weak transcription	HSMMtube	muscle
12	chr18:45514200-45518800	Weak transcription	Fetal Brain Male	brain
13	chr18:45514400-45515600	Weak transcription	A549	lung
14	chr18:45514600-45520000	Weak transcription	Monocytes-CD14+_RO01746	blood

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