Variant report

Variant	rs72916076
Chromosome Location	chr18:45527743-45527744
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:45455865..45457425-chr18:45526231..45528153,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000175387	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs13382003	1.00[ASN][1000 genomes]
rs28594148	1.00[ASN][1000 genomes]
rs28637555	1.00[ASN][1000 genomes]
rs4328241	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4329718	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4331136	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4341811	1.00[ASN][1000 genomes]
rs4401107	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4603334	0.94[EUR][1000 genomes]
rs4623931	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56055402	0.94[EUR][1000 genomes]
rs58746990	1.00[ASN][1000 genomes]
rs60118920	1.00[ASN][1000 genomes]
rs7227917	1.00[ASN][1000 genomes]
rs7228052	1.00[ASN][1000 genomes]
rs7242462	1.00[ASN][1000 genomes]
rs72916011	0.94[EUR][1000 genomes]
rs72916012	0.94[EUR][1000 genomes]
rs72916016	0.94[EUR][1000 genomes]
rs72916027	0.94[EUR][1000 genomes]
rs72916029	0.94[EUR][1000 genomes]
rs72916032	0.94[EUR][1000 genomes]
rs72916034	0.94[EUR][1000 genomes]
rs72916036	0.94[EUR][1000 genomes]
rs72916048	0.94[EUR][1000 genomes]
rs72916073	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72916077	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72916085	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72916088	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72916089	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72916090	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72916093	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9950457	1.00[ASN][1000 genomes]
rs9950557	1.00[ASN][1000 genomes]
rs9957725	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909616	chr18:45467806-45844500	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1066479	chr18:45505569-45554507	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1055669	chr18:45513090-45559375	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45517600-45529000	Weak transcription	Right Ventricle	heart
2	chr18:45520400-45529600	Weak transcription	Stomach Mucosa	stomach
3	chr18:45524200-45529000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr18:45525200-45531200	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr18:45526200-45529000	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr18:45526200-45529200	Enhancers	Hela-S3	cervix
7	chr18:45526600-45529200	Weak transcription	Fetal Thymus	thymus
8	chr18:45526800-45529000	Weak transcription	HUVEC	blood vessel
9	chr18:45527200-45530200	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr18:45527200-45530800	Weak transcription	Primary hematopoietic stem cells	blood
11	chr18:45527400-45529800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr18:45527400-45529800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr18:45527400-45530000	Weak transcription	Primary monocytes fromperipheralblood	blood

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