Variant report

Variant	rs72923441
Chromosome Location	chr6:72107757-72107758
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs72923452	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72927166	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72927173	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72927185	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72929958	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830684	chr6:72094842-72282684	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	488 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:72098400-72117200	Weak transcription	Pancreas	Pancrea
2	chr6:72099600-72114400	Weak transcription	Fetal Intestine Large	intestine
3	chr6:72100200-72113200	Weak transcription	Fetal Intestine Small	intestine
4	chr6:72101000-72113200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr6:72101600-72111400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr6:72103400-72114400	Weak transcription	Small Intestine	intestine
7	chr6:72104000-72122000	Weak transcription	Fetal Stomach	stomach
8	chr6:72104200-72111800	Weak transcription	Fetal Heart	heart
9	chr6:72105000-72110400	Weak transcription	Rectal Smooth Muscle	rectum
10	chr6:72105000-72113000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr6:72105400-72107800	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr6:72105600-72117200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:72106000-72107800	Genic enhancers	A549	lung
14	chr6:72106000-72109200	Weak transcription	NHLF	lung
15	chr6:72106000-72119600	Weak transcription	Lung	lung
16	chr6:72106000-72124800	Weak transcription	Fetal Muscle Leg	muscle
17	chr6:72106200-72108000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr6:72106200-72109400	Genic enhancers	Fetal Kidney	kidney
19	chr6:72106200-72113800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr6:72106400-72107800	Strong transcription	Placenta	Placenta
21	chr6:72106400-72108000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr6:72106400-72126800	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr6:72106400-72128600	Weak transcription	Fetal Brain Male	brain
24	chr6:72106600-72107800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr6:72106600-72107800	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr6:72106600-72107800	Strong transcription	Fetal Muscle Trunk	muscle
27	chr6:72106600-72107800	Strong transcription	Stomach Smooth Muscle	stomach
28	chr6:72106600-72108000	Strong transcription	Muscle Satellite Cultured Cells	--
29	chr6:72106600-72108000	Strong transcription	Fetal Lung	lung
30	chr6:72106600-72110400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr6:72106600-72113200	Weak transcription	Brain Anterior Caudate	brain
32	chr6:72106600-72117200	Weak transcription	Gastric	stomach
33	chr6:72106600-72122000	Weak transcription	Brain Substantia Nigra	brain
34	chr6:72106800-72107800	Strong transcription	Brain Hippocampus Middle	brain
35	chr6:72106800-72107800	Strong transcription	Left Ventricle	heart
36	chr6:72106800-72107800	Strong transcription	HUVEC	blood vessel
37	chr6:72106800-72107800	Strong transcription	NH-A	brain
38	chr6:72106800-72107800	Strong transcription	Osteobl	bone
39	chr6:72106800-72109200	Weak transcription	NHDF-Ad	bronchial
40	chr6:72106800-72109600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr6:72106800-72110200	Weak transcription	Colon Smooth Muscle	Colon
42	chr6:72106800-72110200	Genic enhancers	Hela-S3	cervix
43	chr6:72106800-72110400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr6:72106800-72111200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr6:72106800-72113000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr6:72106800-72113000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr6:72106800-72113200	Weak transcription	Right Ventricle	heart
48	chr6:72106800-72113600	Weak transcription	Aorta	Aorta
49	chr6:72106800-72117000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr6:72106800-72119400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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