Variant report

Variant	rs72927166
Chromosome Location	chr6:72167719-72167720
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs72923441	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72923452	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72927173	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72927185	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830684	chr6:72094842-72282684	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	488 gene(s)	inside rSNPs	diseases
2	esv3365895	chr6:72163481-72168279	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:72162800-72170400	Weak transcription	NHDF-Ad	bronchial
2	chr6:72167400-72167800	Enhancers	HMEC	breast
3	chr6:72167400-72167800	Enhancers	HSMMtube	muscle
4	chr6:72167400-72167800	Enhancers	NHEK	skin
5	chr6:72167400-72168000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:72167400-72168000	Enhancers	Fetal Muscle Leg	muscle
7	chr6:72167600-72168000	Enhancers	Adipose Nuclei	Adipose
8	chr6:72167600-72168400	Enhancers	Lung	lung
9	chr6:72167600-72168400	Enhancers	Pancreas	Pancrea

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links