Variant report

Variant	rs72923452
Chromosome Location	chr6:72113222-72113223
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs72923441	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72927166	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72927173	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72927185	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72929958	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830684	chr6:72094842-72282684	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	488 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:72098400-72117200	Weak transcription	Pancreas	Pancrea
2	chr6:72099600-72114400	Weak transcription	Fetal Intestine Large	intestine
3	chr6:72103400-72114400	Weak transcription	Small Intestine	intestine
4	chr6:72104000-72122000	Weak transcription	Fetal Stomach	stomach
5	chr6:72105600-72117200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:72106000-72119600	Weak transcription	Lung	lung
7	chr6:72106000-72124800	Weak transcription	Fetal Muscle Leg	muscle
8	chr6:72106200-72113800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:72106400-72126800	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr6:72106400-72128600	Weak transcription	Fetal Brain Male	brain
11	chr6:72106600-72117200	Weak transcription	Gastric	stomach
12	chr6:72106600-72122000	Weak transcription	Brain Substantia Nigra	brain
13	chr6:72106800-72113600	Weak transcription	Aorta	Aorta
14	chr6:72106800-72117000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr6:72106800-72119400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr6:72106800-72122000	Weak transcription	Brain Cingulate Gyrus	brain
17	chr6:72106800-72128600	Weak transcription	Fetal Brain Female	brain
18	chr6:72106800-72128800	Weak transcription	Brain Germinal Matrix	brain
19	chr6:72107200-72113800	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr6:72107800-72114400	Weak transcription	Placenta	Placenta
21	chr6:72107800-72118400	Weak transcription	Brain Hippocampus Middle	brain
22	chr6:72107800-72125000	Weak transcription	Fetal Muscle Trunk	muscle
23	chr6:72110800-72113800	Weak transcription	Brain Angular Gyrus	brain
24	chr6:72111800-72113400	Enhancers	iPS-20b Cell Line	embryonic stem cell
25	chr6:72111800-72114000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr6:72111800-72114000	Enhancers	HUES64 Cell Line	embryonic stem cell
27	chr6:72111800-72114400	Flanking Active TSS	HUVEC	blood vessel
28	chr6:72111800-72116000	Enhancers	HUES6 Cell Line	embryonic stem cell
29	chr6:72112000-72113800	Enhancers	HUES48 Cell Line	embryonic stem cell
30	chr6:72112000-72115800	Enhancers	NHDF-Ad	bronchial
31	chr6:72112000-72117200	Weak transcription	Left Ventricle	heart
32	chr6:72112000-72117600	Enhancers	iPS-18 Cell Line	embryonic stem cell
33	chr6:72112200-72115000	Active TSS	A549	lung
34	chr6:72112400-72115400	Enhancers	Fetal Heart	heart
35	chr6:72112600-72114000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr6:72112600-72114200	Enhancers	ES-I3 Cell Line	embryonic stem cell
37	chr6:72112600-72115400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr6:72112800-72113400	Enhancers	H1 Cell Line	embryonic stem cell
39	chr6:72112800-72113400	Flanking Active TSS	Fetal Kidney	kidney
40	chr6:72112800-72114600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
41	chr6:72112800-72114600	Enhancers	Rectal Smooth Muscle	rectum
42	chr6:72112800-72114800	Enhancers	HepG2	liver
43	chr6:72112800-72116000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr6:72112800-72116200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
45	chr6:72112800-72118200	Enhancers	iPS-15b Cell Line	embryonic stem cell
46	chr6:72113000-72113400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr6:72113000-72113400	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
48	chr6:72113000-72113400	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr6:72113000-72113400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr6:72113000-72113400	Enhancers	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links