Variant report

Variant	rs72926029
Chromosome Location	chr4:129985053-129985054
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs56219732	1.00[AMR][1000 genomes]
rs56765848	1.00[AFR][1000 genomes]
rs58051833	1.00[AFR][1000 genomes]
rs59285303	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59715472	1.00[AFR][1000 genomes]
rs61702015	1.00[AFR][1000 genomes]
rs72922050	1.00[AFR][1000 genomes]
rs72922052	1.00[AFR][1000 genomes]
rs72922062	1.00[AFR][1000 genomes]
rs72922075	1.00[AFR][1000 genomes]
rs72922078	1.00[AFR][1000 genomes]
rs72922083	1.00[AFR][1000 genomes]
rs72922086	1.00[AFR][1000 genomes]
rs72922093	1.00[AFR][1000 genomes]
rs72922097	1.00[AFR][1000 genomes]
rs72922099	1.00[AFR][1000 genomes]
rs72922102	1.00[AFR][1000 genomes]
rs72922806	1.00[AMR][1000 genomes]
rs72924103	1.00[AFR][1000 genomes]
rs72924109	1.00[AFR][1000 genomes]
rs72924111	1.00[AFR][1000 genomes]
rs72924115	1.00[AFR][1000 genomes]
rs72924122	1.00[AFR][1000 genomes]
rs72924130	0.81[AFR][1000 genomes]
rs72924138	1.00[AFR][1000 genomes]
rs72924154	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72924157	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72924160	1.00[AFR][1000 genomes]
rs72924167	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72924180	1.00[AFR][1000 genomes]
rs72924185	1.00[AFR][1000 genomes]
rs72926010	1.00[AFR][1000 genomes]
rs72926011	1.00[AFR][1000 genomes]
rs72926013	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72926017	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72926020	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72926030	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72926036	1.00[AFR][1000 genomes]
rs72926056	1.00[AFR][1000 genomes]
rs72926071	1.00[AFR][1000 genomes]
rs72926072	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72926087	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72926090	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72927922	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72927928	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72927936	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869258	chr4:129191619-130138148	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
2	nsv534538	chr4:129799138-130431688	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv522694	chr4:129862073-129994690	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv879931	chr4:129939775-130178102	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:129977200-130000600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr4:129980000-129986000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
3	chr4:129980200-129985200	ZNF genes & repeats	Adipose Nuclei	Adipose
4	chr4:129980200-129985400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
5	chr4:129980200-129986200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr4:129980400-129985600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr4:129981200-129987200	ZNF genes & repeats	Dnd41	blood
8	chr4:129981400-129985200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr4:129981400-129985200	ZNF genes & repeats	Duodenum Mucosa	Duodenum
10	chr4:129981400-129985200	ZNF genes & repeats	Fetal Muscle Leg	muscle
11	chr4:129981400-129987000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr4:129981600-129985200	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr4:129981600-129985200	ZNF genes & repeats	Primary T cells from cord blood	blood
14	chr4:129981600-129985200	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
15	chr4:129981600-129985200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr4:129981600-129985200	ZNF genes & repeats	Liver	Liver
17	chr4:129981600-129985200	ZNF genes & repeats	Fetal Brain Female	brain
18	chr4:129981600-129985200	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
19	chr4:129981800-129985200	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr4:129981800-129985200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
21	chr4:129981800-129985200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
22	chr4:129981800-129985200	ZNF genes & repeats	Fetal Intestine Small	intestine
23	chr4:129981800-129985200	ZNF genes & repeats	A549	lung
24	chr4:129981800-129985400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr4:129982000-129985200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
26	chr4:129982200-129985200	ZNF genes & repeats	Fetal Lung	lung
27	chr4:129982200-129985200	ZNF genes & repeats	GM12878-XiMat	blood
28	chr4:129982400-129985200	ZNF genes & repeats	Primary B cells from cord blood	blood
29	chr4:129982400-129985200	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
30	chr4:129982400-129985200	ZNF genes & repeats	K562	blood
31	chr4:129982400-129985400	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
32	chr4:129982600-129985200	ZNF genes & repeats	Fetal Muscle Trunk	muscle
33	chr4:129982600-129985200	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
34	chr4:129982600-129985400	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
35	chr4:129982600-129985400	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr4:129982600-129986000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
37	chr4:129982800-129985200	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
38	chr4:129982800-129985200	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood
39	chr4:129983000-129985200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr4:129983000-129985200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr4:129983000-129985200	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
42	chr4:129983000-129994000	Weak transcription	Fetal Kidney	kidney
43	chr4:129983000-130001600	Weak transcription	Fetal Heart	heart
44	chr4:129983200-129985200	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
45	chr4:129983400-129985200	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
46	chr4:129983600-129985200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr4:129984200-129985200	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
48	chr4:129984400-129985200	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr4:129984400-129985200	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr4:129984400-129985200	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell

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