Variant report

Variant	rs72926056
Chromosome Location	chr4:129994159-129994160
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:129993871..129996634-chr4:130011774..130013975,2	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs56765848	1.00[AFR][1000 genomes]
rs58051833	1.00[AFR][1000 genomes]
rs59285303	1.00[AFR][1000 genomes]
rs59715472	1.00[AFR][1000 genomes]
rs61702015	1.00[AFR][1000 genomes]
rs72922050	1.00[AFR][1000 genomes]
rs72922052	1.00[AFR][1000 genomes]
rs72922062	1.00[AFR][1000 genomes]
rs72922075	1.00[AFR][1000 genomes]
rs72922078	1.00[AFR][1000 genomes]
rs72922083	1.00[AFR][1000 genomes]
rs72922086	1.00[AFR][1000 genomes]
rs72922093	1.00[AFR][1000 genomes]
rs72922097	1.00[AFR][1000 genomes]
rs72922099	1.00[AFR][1000 genomes]
rs72922102	1.00[AFR][1000 genomes]
rs72924103	1.00[AFR][1000 genomes]
rs72924109	1.00[AFR][1000 genomes]
rs72924111	1.00[AFR][1000 genomes]
rs72924115	1.00[AFR][1000 genomes]
rs72924122	1.00[AFR][1000 genomes]
rs72924130	0.81[AFR][1000 genomes]
rs72924138	1.00[AFR][1000 genomes]
rs72924154	1.00[AFR][1000 genomes]
rs72924157	1.00[AFR][1000 genomes]
rs72924160	1.00[AFR][1000 genomes]
rs72924167	1.00[AFR][1000 genomes]
rs72924180	1.00[AFR][1000 genomes]
rs72924185	1.00[AFR][1000 genomes]
rs72926010	1.00[AFR][1000 genomes]
rs72926011	1.00[AFR][1000 genomes]
rs72926013	1.00[AFR][1000 genomes]
rs72926017	1.00[AFR][1000 genomes]
rs72926020	1.00[AFR][1000 genomes]
rs72926029	1.00[AFR][1000 genomes]
rs72926030	1.00[AFR][1000 genomes]
rs72926036	1.00[AFR][1000 genomes]
rs72926071	1.00[AFR][1000 genomes]
rs72926072	1.00[AFR][1000 genomes]
rs72926087	1.00[AFR][1000 genomes]
rs72926090	1.00[AFR][1000 genomes]
rs72927922	0.81[AFR][1000 genomes]
rs72927928	0.90[AFR][1000 genomes]
rs72927936	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869258	chr4:129191619-130138148	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
2	nsv534538	chr4:129799138-130431688	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv522694	chr4:129862073-129994690	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv879931	chr4:129939775-130178102	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:129977200-130000600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr4:129983000-130001600	Weak transcription	Fetal Heart	heart
3	chr4:129985000-130000000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr4:129985000-130000000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr4:129985000-130000000	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr4:129985000-130000200	Weak transcription	Brain Hippocampus Middle	brain
7	chr4:129985200-129994200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr4:129985200-129994200	Weak transcription	Esophagus	oesophagus
9	chr4:129985200-129994200	Weak transcription	K562	blood
10	chr4:129985200-129997200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr4:129985200-129999000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr4:129985200-130000000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr4:129985200-130000000	Weak transcription	Fetal Stomach	stomach
14	chr4:129985200-130000200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr4:129985200-130000600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr4:129985200-130000600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr4:129985200-130000600	Weak transcription	Adipose Nuclei	Adipose
18	chr4:129985200-130000600	Weak transcription	Placenta	Placenta
19	chr4:129985200-130000600	Weak transcription	Gastric	stomach
20	chr4:129985200-130000600	Weak transcription	Lung	lung
21	chr4:129985200-130000600	Weak transcription	Ovary	ovary
22	chr4:129985200-130000600	Weak transcription	Spleen	Spleen
23	chr4:129985200-130001000	Weak transcription	Primary T helper cells PMA-I stimulated	--
24	chr4:129985200-130001200	Weak transcription	Small Intestine	intestine
25	chr4:129985200-130002200	Weak transcription	Pancreas	Pancrea
26	chr4:129985200-130012200	Weak transcription	HSMM	muscle
27	chr4:129985200-130013000	Weak transcription	Rectal Smooth Muscle	rectum
28	chr4:129985200-130013200	Weak transcription	Colon Smooth Muscle	Colon
29	chr4:129986600-130000800	Weak transcription	Osteobl	bone
30	chr4:129986600-130001000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr4:129987000-130011600	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr4:129987400-130000600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr4:129987600-130000600	Weak transcription	NHLF	lung
34	chr4:129990400-130004000	Weak transcription	Right Ventricle	heart
35	chr4:129990800-129996800	Weak transcription	Primary T cells fromperipheralblood	blood
36	chr4:129991000-129994600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr4:129991600-129998600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr4:129991600-130011800	Weak transcription	Hela-S3	cervix
39	chr4:129991800-130012000	Weak transcription	HUVEC	blood vessel
40	chr4:129992000-130000200	Weak transcription	Primary T helper cells fromperipheralblood	blood
41	chr4:129992200-129994200	ZNF genes & repeats	Fetal Lung	lung
42	chr4:129992200-130000600	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr4:129992200-130003600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr4:129992200-130005400	Weak transcription	Psoas Muscle	Psoas
45	chr4:129992400-130001200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr4:129992600-129994800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr4:129992600-130000800	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr4:129992600-130005800	Weak transcription	Pancreatic Islets	Pancreatic Islet
49	chr4:129992600-130012000	Weak transcription	HepG2	liver
50	chr4:129992800-130001000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links