Variant report

Variant	rs72929917
Chromosome Location	chr2:56609382-56609383
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs56055930	1.00[AMR][1000 genomes]
rs57530094	1.00[AMR][1000 genomes]
rs59175071	1.00[AMR][1000 genomes]
rs59975052	1.00[AMR][1000 genomes]
rs72927158	1.00[AMR][1000 genomes]
rs73940646	1.00[AMR][1000 genomes]
rs73940647	1.00[AMR][1000 genomes]
rs73940656	1.00[AMR][1000 genomes]
rs73940675	1.00[AMR][1000 genomes]
rs73940681	1.00[AMR][1000 genomes]
rs73940683	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530516	chr2:56447922-56633505	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv834093	chr2:56538097-56708677	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1004449	chr2:56538460-56715861	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv874171	chr2:56545845-56727178	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv522944	chr2:56603985-56676997	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv1806915	chr2:56607397-56633217	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:56576000-56613200	Weak transcription	Left Ventricle	heart
2	chr2:56599600-56610400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr2:56606400-56610600	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr2:56606600-56611200	Weak transcription	HSMM	muscle
5	chr2:56608400-56611400	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr2:56608400-56612200	Weak transcription	Adipose Nuclei	Adipose
7	chr2:56608600-56611200	Enhancers	Fetal Intestine Small	intestine
8	chr2:56608800-56611200	Enhancers	Fetal Intestine Large	intestine
9	chr2:56609200-56610400	Enhancers	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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