Variant report

Variant	rs73940681
Chromosome Location	chr2:56575370-56575371
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs56055930	1.00[AMR][1000 genomes]
rs57530094	1.00[AMR][1000 genomes]
rs59175071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59975052	1.00[AMR][1000 genomes]
rs72927158	1.00[AMR][1000 genomes]
rs72929917	1.00[AMR][1000 genomes]
rs73940646	1.00[AMR][1000 genomes]
rs73940647	1.00[AMR][1000 genomes]
rs73940656	1.00[AMR][1000 genomes]
rs73940675	1.00[AMR][1000 genomes]
rs73940683	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530516	chr2:56447922-56633505	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv874170	chr2:56496589-56590865	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv834093	chr2:56538097-56708677	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1004449	chr2:56538460-56715861	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv874171	chr2:56545845-56727178	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv582032	chr2:56551074-56599354	Weak transcription Enhancers Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:56560600-56575400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr2:56562400-56577600	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr2:56574600-56586400	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr2:56575000-56575800	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr2:56575000-56575800	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr2:56575000-56575800	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr2:56575000-56576000	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr2:56575000-56576000	Strong transcription	HSMM	muscle
9	chr2:56575000-56576200	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr2:56575200-56575600	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr2:56575200-56575800	Enhancers	H1 Cell Line	embryonic stem cell
12	chr2:56575200-56575800	Enhancers	H9 Cell Line	embryonic stem cell
13	chr2:56575200-56575800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr2:56575200-56576200	Enhancers	Fetal Heart	heart
15	chr2:56575200-56576800	Enhancers	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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