Variant report

Variant	rs73940656
Chromosome Location	chr2:56542984-56542985
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs56055930	1.00[AMR][1000 genomes]
rs57530094	1.00[AMR][1000 genomes]
rs59175071	1.00[AMR][1000 genomes]
rs59975052	1.00[AMR][1000 genomes]
rs62164360	0.87[AFR][1000 genomes]
rs62164361	0.83[AFR][1000 genomes]
rs72927158	1.00[AMR][1000 genomes]
rs72929917	1.00[AMR][1000 genomes]
rs73940646	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73940647	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73940675	1.00[AMR][1000 genomes]
rs73940681	1.00[AMR][1000 genomes]
rs73940683	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530516	chr2:56447922-56633505	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv522006	chr2:56496589-56545845	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv874170	chr2:56496589-56590865	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv834093	chr2:56538097-56708677	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1004449	chr2:56538460-56715861	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:56527400-56547400	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr2:56527600-56561000	Weak transcription	HSMM	muscle
3	chr2:56540400-56543400	Enhancers	Adipose Nuclei	Adipose
4	chr2:56541400-56545400	Weak transcription	Left Ventricle	heart
5	chr2:56541600-56543400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr2:56542600-56543400	Enhancers	Fetal Muscle Leg	muscle
7	chr2:56542800-56543200	Enhancers	Psoas Muscle	Psoas
8	chr2:56542800-56547400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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