The 2.0 version of rSNPBase

Variant report

Variant rs72930677
Chromosome Location chr3:100498778-100498779
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:41 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:100450000-100501000 Weak transcription Esophagus oesophagus
2 chr3:100469800-100501400 Weak transcription Rectal Smooth Muscle rectum
3 chr3:100471600-100500400 Weak transcription Lung lung
4 chr3:100471800-100502000 Weak transcription Brain Anterior Caudate brain
5 chr3:100474400-100500200 Weak transcription HSMM muscle
6 chr3:100474400-100501200 Weak transcription Breast Myoepithelial Primary Cells Breast
7 chr3:100475000-100499000 Weak transcription Placenta Placenta
8 chr3:100475600-100520000 Weak transcription Skeletal Muscle Male skeletal muscle
9 chr3:100478800-100502000 Weak transcription Psoas Muscle Psoas
10 chr3:100488600-100504600 Weak transcription Adipose Nuclei Adipose
11 chr3:100489600-100500200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
12 chr3:100489800-100504800 Weak transcription Left Ventricle heart
13 chr3:100492400-100501000 Strong transcription Stomach Smooth Muscle stomach
14 chr3:100494800-100499200 Strong transcription Fetal Stomach stomach
15 chr3:100494800-100501600 Weak transcription HMEC breast
16 chr3:100494800-100523400 Weak transcription Skeletal Muscle Female skeletal muscle
17 chr3:100495000-100499200 Strong transcription HSMMtube muscle
18 chr3:100495000-100501000 Weak transcription Colon Smooth Muscle Colon
19 chr3:100495600-100499000 Strong transcription Ovary ovary
20 chr3:100496200-100504200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
21 chr3:100496600-100500000 Weak transcription NHEK skin
22 chr3:100496600-100500400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
23 chr3:100496800-100498800 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
24 chr3:100496800-100498800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
25 chr3:100496800-100498800 Weak transcription NH-A brain
26 chr3:100496800-100500000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
27 chr3:100496800-100500400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
28 chr3:100496800-100500400 Weak transcription NHLF lung
29 chr3:100496800-100501200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
30 chr3:100496800-100511200 Weak transcription Aorta Aorta
31 chr3:100497200-100500000 Strong transcription Osteobl bone
32 chr3:100497200-100500400 Weak transcription Fetal Muscle Leg muscle
33 chr3:100497200-100500600 Weak transcription Fetal Lung lung
34 chr3:100497200-100501000 Weak transcription Fetal Muscle Trunk muscle
35 chr3:100497200-100501400 Weak transcription Fetal Intestine Large intestine
36 chr3:100497200-100504400 Weak transcription Duodenum Smooth Muscle Duodenum
37 chr3:100498200-100501400 Weak transcription Sigmoid Colon Sigmoid Colon
38 chr3:100498200-100502400 Enhancers Muscle Satellite Cultured Cells --
39 chr3:100498200-100502800 Genic enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
40 chr3:100498600-100500000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
41 chr3:100498600-100503000 Enhancers NHDF-Ad bronchial

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Last update: Aug 31, 2015