The 2.0 version of rSNPBase

Variant report

Variant rs72934290
Chromosome Location chr3:49554220-49554221
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:125 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:49529600-49568600 Weak transcription Primary neutrophils fromperipheralblood blood
2 chr3:49538000-49554800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
3 chr3:49539600-49568600 Weak transcription Small Intestine intestine
4 chr3:49546200-49577000 Weak transcription Primary T killer memory cells from peripheral blood blood
5 chr3:49546400-49554400 Strong transcription Foreskin Melanocyte Primary Cells skin01 Skin
6 chr3:49546600-49556200 Weak transcription ES-WA7 Cell Line embryonic stem cell
7 chr3:49546600-49556400 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
8 chr3:49547000-49572000 Weak transcription Fetal Brain Male brain
9 chr3:49547400-49562200 Strong transcription Primary T cells from cord blood blood
10 chr3:49547600-49555400 Strong transcription iPS-18 Cell Line embryonic stem cell
11 chr3:49547600-49556000 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
12 chr3:49547600-49556200 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
13 chr3:49547600-49564200 Strong transcription Fetal Intestine Small intestine
14 chr3:49547800-49554800 Strong transcription Fetal Muscle Leg muscle
15 chr3:49547800-49555000 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
16 chr3:49547800-49555800 Strong transcription Fetal Adrenal Gland Adrenal Gland
17 chr3:49547800-49556200 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
18 chr3:49547800-49556200 Strong transcription Primary T helper cells fromperipheralblood blood
19 chr3:49547800-49556400 Strong transcription Primary B cells from peripheral blood blood
20 chr3:49547800-49557200 Strong transcription HUES64 Cell Line embryonic stem cell
21 chr3:49547800-49557800 Strong transcription Rectal Mucosa Donor 29 rectum
22 chr3:49547800-49558000 Strong transcription iPS-20b Cell Line embryonic stem cell
23 chr3:49547800-49559000 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
24 chr3:49547800-49560400 Strong transcription Fetal Thymus thymus
25 chr3:49547800-49562800 Strong transcription Fetal Stomach stomach
26 chr3:49548000-49556200 Strong transcription Primary Natural Killer cells fromperipheralblood blood
27 chr3:49548000-49556400 Strong transcription HUES48 Cell Line embryonic stem cell
28 chr3:49548000-49562800 Strong transcription Fetal Intestine Large intestine
29 chr3:49548200-49556400 Strong transcription Fetal Muscle Trunk muscle
30 chr3:49548400-49577400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
31 chr3:49549200-49554800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
32 chr3:49549200-49554800 Weak transcription Fetal Lung lung
33 chr3:49549200-49568800 Weak transcription Osteobl bone
34 chr3:49549400-49554800 Weak transcription Primary T killer naive cells fromperipheralblood blood
35 chr3:49549400-49554800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
36 chr3:49549800-49557400 Strong transcription Stomach Smooth Muscle stomach
37 chr3:49550000-49554400 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
38 chr3:49550000-49556600 Strong transcription Primary T helper naive cells fromperipheralblood blood
39 chr3:49550200-49558000 Strong transcription Duodenum Mucosa Duodenum
40 chr3:49550400-49555400 Strong transcription Brain Dorsolateral Prefrontal Cortex brain
41 chr3:49550400-49556400 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
42 chr3:49550600-49558600 Strong transcription Sigmoid Colon Sigmoid Colon
43 chr3:49550800-49554800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
44 chr3:49550800-49555400 Strong transcription Lung lung
45 chr3:49550800-49556600 Strong transcription Primary T cells effector/memory enriched fromperipheralblood blood
46 chr3:49550800-49568400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
47 chr3:49551200-49554600 Weak transcription ES-I3 Cell Line embryonic stem cell
48 chr3:49551200-49554800 Weak transcription Primary hematopoietic stem cells short term culture blood
49 chr3:49551200-49555200 Weak transcription Ovary ovary
50 chr3:49551200-49556200 Weak transcription Brain Substantia Nigra brain

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Last update: Aug 31, 2015