The 2.0 version of rSNPBase

Variant report

Variant rs55808753
Chromosome Location chr3:49388095-49388096
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:83 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:49378600-49388400 Weak transcription Brain Hippocampus Middle brain
2 chr3:49378600-49388800 Weak transcription Brain Substantia Nigra brain
3 chr3:49378600-49388800 Weak transcription Rectal Mucosa Donor 31 rectum
4 chr3:49378600-49390000 Weak transcription Placenta Amnion Placenta Amnion
5 chr3:49378600-49392000 Enhancers Primary monocytes fromperipheralblood blood
6 chr3:49379000-49392000 Weak transcription Left Ventricle heart
7 chr3:49379800-49392800 Weak transcription Thymus Thymus
8 chr3:49381400-49388800 Weak transcription Skeletal Muscle Female skeletal muscle
9 chr3:49381600-49393000 Weak transcription Right Atrium heart
10 chr3:49382200-49388200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
11 chr3:49383000-49388800 Weak transcription Primary T regulatory cells fromperipheralblood blood
12 chr3:49383000-49388800 Weak transcription Fetal Thymus thymus
13 chr3:49383000-49389200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
14 chr3:49383000-49389400 Weak transcription Spleen Spleen
15 chr3:49383000-49393600 Weak transcription Primary T cells from cord blood blood
16 chr3:49383200-49391800 Weak transcription Primary T cells fromperipheralblood blood
17 chr3:49383200-49392400 Weak transcription Primary T helper cells fromperipheralblood blood
18 chr3:49383400-49388200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
19 chr3:49383400-49388200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
20 chr3:49383400-49389000 Weak transcription Primary T helper cells PMA-I stimulated --
21 chr3:49383400-49391400 Enhancers Primary hematopoietic stem cells short term culture blood
22 chr3:49383600-49388600 Enhancers Primary neutrophils fromperipheralblood blood
23 chr3:49384000-49388400 Weak transcription Skeletal Muscle Male skeletal muscle
24 chr3:49384400-49388200 Weak transcription NHLF lung
25 chr3:49384600-49388200 Weak transcription HSMM muscle
26 chr3:49384600-49388800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
27 chr3:49384600-49388800 Weak transcription HSMMtube muscle
28 chr3:49384600-49389000 Weak transcription NH-A brain
29 chr3:49384600-49392000 Weak transcription Fetal Muscle Leg muscle
30 chr3:49384600-49392400 Weak transcription Fetal Muscle Trunk muscle
31 chr3:49384800-49388200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
32 chr3:49384800-49388200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
33 chr3:49384800-49388200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
34 chr3:49384800-49388200 Weak transcription A549 lung
35 chr3:49384800-49388200 Weak transcription Osteobl bone
36 chr3:49384800-49388400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
37 chr3:49384800-49388800 Weak transcription Psoas Muscle Psoas
38 chr3:49384800-49391800 Weak transcription Breast Myoepithelial Primary Cells Breast
39 chr3:49385000-49388200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
40 chr3:49385200-49388200 Weak transcription HMEC breast
41 chr3:49385200-49388400 Weak transcription NHDF-Ad bronchial
42 chr3:49385200-49388400 Weak transcription NHEK skin
43 chr3:49385200-49388800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
44 chr3:49385200-49388800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
45 chr3:49385200-49389000 Enhancers Hela-S3 cervix
46 chr3:49385600-49388200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
47 chr3:49385600-49388200 Weak transcription Primary B cells from peripheral blood blood
48 chr3:49385800-49389600 Enhancers Fetal Intestine Small intestine
49 chr3:49385800-49390200 Enhancers Fetal Intestine Large intestine
50 chr3:49386200-49389000 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --

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Last update: Aug 31, 2015