Variant report

Variant	rs8179172
Chromosome Location	chr3:49393267-49393268
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:49376682..49378615-chr3:49390504..49394214,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000114316	Chromatin interaction

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs11130197	1.00[YRI][hapmap]
rs11130201	0.89[AFR][1000 genomes]
rs11708174	1.00[ASW][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs11717485	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1522929	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1568663	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17080495	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17080510	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17080567	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17080664	0.92[AFR][1000 genomes]
rs1996874	1.00[ASW][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2131107	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2311794	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2311801	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2329024	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28615670	1.00[EUR][1000 genomes]
rs3870334	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3870340	0.82[ASW][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3912831	1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4241409	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4452334	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4527417	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4855856	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4855857	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4855870	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4855872	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4855874	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4855875	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4855876	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4855878	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4855879	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55677747	0.81[AFR][1000 genomes]
rs55808753	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55990645	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56101322	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56760510	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56897974	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58998762	1.00[EUR][1000 genomes]
rs59579780	0.86[AFR][1000 genomes]
rs60011446	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61744082	1.00[EUR][1000 genomes]
rs61749312	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6446269	0.97[AFR][1000 genomes]
rs6446270	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6446271	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6446273	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6446276	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6446278	0.88[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6446279	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6446280	0.92[AFR][1000 genomes]
rs6446281	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6446282	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6446283	1.00[EUR][1000 genomes]
rs6762593	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs6766297	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6787665	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6793124	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6797164	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72936810	1.00[EUR][1000 genomes]
rs72936890	1.00[EUR][1000 genomes]
rs73830703	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73830704	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73830705	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73830706	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73831434	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73831435	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73831436	1.00[EUR][1000 genomes]
rs73831437	1.00[EUR][1000 genomes]
rs73831438	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73831439	0.86[AFR][1000 genomes]
rs73831440	0.86[AFR][1000 genomes]
rs73831441	0.86[AFR][1000 genomes]
rs73831442	0.92[AFR][1000 genomes]
rs73833525	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7646393	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9311441	1.00[AFR][1000 genomes]
rs9811460	1.00[EUR][1000 genomes]
rs9814413	1.00[EUR][1000 genomes]
rs9830627	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9833422	1.00[EUR][1000 genomes]
rs9837396	1.00[EUR][1000 genomes]
rs9849446	1.00[EUR][1000 genomes]
rs9861805	0.82[ASW][hapmap];1.00[TSI][hapmap];0.84[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9869504	1.00[EUR][1000 genomes]
rs9875203	0.82[ASW][hapmap];1.00[TSI][hapmap];0.84[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9877045	1.00[EUR][1000 genomes]

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:49383000-49393600	Weak transcription	Primary T cells from cord blood	blood
2	chr3:49387400-49393800	Weak transcription	Gastric	stomach
3	chr3:49388800-49393600	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr3:49389200-49394600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr3:49389400-49393600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr3:49389400-49393800	Weak transcription	Brain Angular Gyrus	brain
7	chr3:49389400-49393800	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr3:49389400-49393800	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr3:49389400-49393800	Weak transcription	Psoas Muscle	Psoas
10	chr3:49389400-49393800	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr3:49389600-49393600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr3:49389600-49393600	Weak transcription	Brain Substantia Nigra	brain
13	chr3:49389600-49393800	Weak transcription	Small Intestine	intestine
14	chr3:49389800-49393600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr3:49389800-49393800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr3:49390200-49393800	Weak transcription	Brain Anterior Caudate	brain
17	chr3:49390400-49393600	Weak transcription	HepG2	liver
18	chr3:49390400-49393800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr3:49390400-49394000	Weak transcription	Stomach Mucosa	stomach
20	chr3:49390600-49393600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr3:49390600-49393600	Weak transcription	Fetal Brain Male	brain
22	chr3:49390600-49393600	Weak transcription	HSMMtube	muscle
23	chr3:49390800-49393600	Weak transcription	Esophagus	oesophagus
24	chr3:49390800-49393800	Weak transcription	Primary neutrophils fromperipheralblood	blood
25	chr3:49390800-49393800	Weak transcription	Rectal Smooth Muscle	rectum
26	chr3:49390800-49396600	Weak transcription	K562	blood
27	chr3:49391400-49393600	Weak transcription	Pancreas	Pancrea
28	chr3:49391600-49393600	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr3:49391800-49393600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr3:49391800-49393600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr3:49391800-49393600	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr3:49391800-49393600	Strong transcription	Fetal Intestine Small	intestine
33	chr3:49391800-49393600	Strong transcription	NHEK	skin
34	chr3:49391800-49393800	Strong transcription	Fetal Intestine Large	intestine
35	chr3:49391800-49394200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr3:49392000-49393600	Genic enhancers	Primary monocytes fromperipheralblood	blood
37	chr3:49392000-49393600	Strong transcription	Fetal Muscle Leg	muscle
38	chr3:49392000-49393600	Strong transcription	Osteobl	bone
39	chr3:49392200-49393600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr3:49392200-49393800	Strong transcription	H1 Cell Line	embryonic stem cell
41	chr3:49392200-49393800	Strong transcription	Fetal Stomach	stomach
42	chr3:49392200-49394200	Strong transcription	Placenta Amnion	Placenta Amnion
43	chr3:49392400-49393600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr3:49392400-49393600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr3:49392400-49393600	Strong transcription	Fetal Muscle Trunk	muscle
46	chr3:49392400-49394400	Genic enhancers	Primary T helper cells fromperipheralblood	blood
47	chr3:49392600-49393600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr3:49392600-49393600	Strong transcription	Fetal Lung	lung
49	chr3:49392600-49393600	Strong transcription	NHLF	lung
50	chr3:49392600-49394200	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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