Variant report

Variant	rs73831437
Chromosome Location	chr3:49581264-49581265
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:49581218..49583706-chr3:49709789..49712577,2	K562	blood:

Variant related genes	Relation type
ENSG00000164062	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs11717485	1.00[EUR][1000 genomes]
rs1522929	1.00[EUR][1000 genomes]
rs1568663	1.00[EUR][1000 genomes]
rs17080495	1.00[EUR][1000 genomes]
rs17080510	1.00[EUR][1000 genomes]
rs17080567	1.00[EUR][1000 genomes]
rs17080664	1.00[AMR][1000 genomes]
rs1996874	1.00[EUR][1000 genomes]
rs2131107	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2311794	1.00[EUR][1000 genomes]
rs2311801	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2329024	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3870334	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3870340	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3912831	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4452334	1.00[EUR][1000 genomes]
rs4855856	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4855857	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4855872	1.00[EUR][1000 genomes]
rs4855874	1.00[EUR][1000 genomes]
rs4855875	1.00[EUR][1000 genomes]
rs4855876	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4855878	1.00[EUR][1000 genomes]
rs4855879	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs55990645	1.00[EUR][1000 genomes]
rs56101322	1.00[EUR][1000 genomes]
rs56760510	1.00[EUR][1000 genomes]
rs56897974	1.00[EUR][1000 genomes]
rs59579780	1.00[AMR][1000 genomes]
rs60011446	1.00[EUR][1000 genomes]
rs61749312	1.00[EUR][1000 genomes]
rs6446270	1.00[EUR][1000 genomes]
rs6446271	1.00[EUR][1000 genomes]
rs6446273	1.00[EUR][1000 genomes]
rs6446276	1.00[EUR][1000 genomes]
rs6446278	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6446279	1.00[EUR][1000 genomes]
rs6446281	1.00[EUR][1000 genomes]
rs6446282	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6446283	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6766297	1.00[EUR][1000 genomes]
rs6787665	1.00[EUR][1000 genomes]
rs6793124	1.00[EUR][1000 genomes]
rs73830703	1.00[EUR][1000 genomes]
rs73830704	1.00[EUR][1000 genomes]
rs73830705	1.00[EUR][1000 genomes]
rs73830706	1.00[EUR][1000 genomes]
rs73831434	1.00[EUR][1000 genomes]
rs73831435	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73831436	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73831438	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73831439	1.00[AMR][1000 genomes]
rs73831440	1.00[AMR][1000 genomes]
rs73831441	1.00[AMR][1000 genomes]
rs73831442	1.00[AMR][1000 genomes]
rs73834006	1.00[AMR][1000 genomes]
rs7646393	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8179172	1.00[EUR][1000 genomes]
rs9830627	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834687	chr3:49448632-49631788	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:49578200-49581600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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