Variant report

Variant	rs4452334
Chromosome Location	chr3:49435132-49435133
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:49376642..49379582-chr3:49433592..49435487,2	K562	blood:
2	chr3:49433634..49436647-chr3:49437237..49441017,4	K562	blood:
3	chr3:49433245..49436928-chr3:49447117..49449989,7	K562	blood:
4	chr3:49433629..49436504-chr3:49455215..49456782,2	MCF-7	breast:
5	chr3:49376096..49378167-chr3:49432966..49435817,2	MCF-7	breast:
6	chr3:49433690..49436598-chr3:49447912..49450850,3	K562	blood:
7	chr3:49433997..49436498-chr3:49444708..49446631,2	K562	blood:
8	chr3:49377051..49379136-chr3:49433300..49435440,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000145020	Chromatin interaction
ENSG00000067560	Chromatin interaction
ENSG00000145022	Chromatin interaction
ENSG00000114316	Chromatin interaction

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs11130201	0.89[AFR][1000 genomes]
rs11717485	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1522929	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1568663	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17080495	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17080510	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17080567	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17080664	0.92[AFR][1000 genomes]
rs1996874	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2131107	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2311794	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2311801	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2329024	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28615670	1.00[EUR][1000 genomes]
rs3870334	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3870340	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3912831	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4241409	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4527417	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4855856	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4855857	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4855870	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4855872	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4855874	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4855875	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4855876	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4855878	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4855879	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55677747	0.81[AFR][1000 genomes]
rs55808753	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55990645	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56101322	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56760510	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56897974	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58998762	1.00[EUR][1000 genomes]
rs59579780	0.86[AFR][1000 genomes]
rs60011446	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61744082	1.00[EUR][1000 genomes]
rs61749312	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6446269	0.97[AFR][1000 genomes]
rs6446270	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6446271	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6446273	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6446276	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6446278	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6446279	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6446280	0.92[AFR][1000 genomes]
rs6446281	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6446282	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6446283	1.00[EUR][1000 genomes]
rs6766297	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6787665	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6793124	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6797164	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72936890	1.00[EUR][1000 genomes]
rs73830703	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73830704	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73830705	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73830706	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73831434	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73831435	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73831436	1.00[EUR][1000 genomes]
rs73831437	1.00[EUR][1000 genomes]
rs73831438	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73831439	0.86[AFR][1000 genomes]
rs73831440	0.86[AFR][1000 genomes]
rs73831441	0.86[AFR][1000 genomes]
rs73831442	0.92[AFR][1000 genomes]
rs73833525	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7646393	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8179172	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9311441	1.00[AFR][1000 genomes]
rs9811460	1.00[EUR][1000 genomes]
rs9814413	1.00[EUR][1000 genomes]
rs9830627	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9837396	1.00[EUR][1000 genomes]
rs9849446	1.00[EUR][1000 genomes]
rs9861805	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9869504	1.00[EUR][1000 genomes]
rs9875203	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:49396800-49438800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:49399000-49448000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:49406000-49445200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr3:49413200-49441400	Weak transcription	Aorta	Aorta
5	chr3:49413200-49443000	Weak transcription	Brain Cingulate Gyrus	brain
6	chr3:49413200-49447400	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr3:49413400-49439000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr3:49413600-49441000	Weak transcription	Fetal Brain Female	brain
9	chr3:49416200-49435200	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr3:49417800-49437800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr3:49422200-49443000	Weak transcription	Rectal Smooth Muscle	rectum
12	chr3:49424200-49443400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr3:49425800-49437800	Weak transcription	Brain Hippocampus Middle	brain
14	chr3:49426000-49436600	Weak transcription	Gastric	stomach
15	chr3:49426000-49444000	Weak transcription	Esophagus	oesophagus
16	chr3:49426200-49437800	Weak transcription	Brain Substantia Nigra	brain
17	chr3:49426200-49443000	Weak transcription	NHLF	lung
18	chr3:49427000-49448400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr3:49427400-49435600	Strong transcription	Fetal Muscle Trunk	muscle
20	chr3:49428000-49436000	Strong transcription	GM12878-XiMat	blood
21	chr3:49428800-49438600	Strong transcription	Fetal Stomach	stomach
22	chr3:49429000-49437000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr3:49429000-49441800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr3:49429000-49447200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr3:49429400-49435400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr3:49429400-49436000	Strong transcription	Fetal Thymus	thymus
27	chr3:49430000-49435800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr3:49430000-49436000	Strong transcription	Dnd41	blood
29	chr3:49430200-49435200	Weak transcription	Pancreas	Pancrea
30	chr3:49430200-49436000	Genic enhancers	Primary T cells fromperipheralblood	blood
31	chr3:49430400-49435200	Genic enhancers	Primary T helper cells fromperipheralblood	blood
32	chr3:49430600-49436000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr3:49430800-49439200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr3:49431000-49435400	Weak transcription	Spleen	Spleen
35	chr3:49431000-49437800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr3:49431200-49447200	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr3:49431800-49435600	Strong transcription	Muscle Satellite Cultured Cells	--
38	chr3:49431800-49436200	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
39	chr3:49431800-49439600	Genic enhancers	Primary B cells from peripheral blood	blood
40	chr3:49432000-49435200	Strong transcription	A549	lung
41	chr3:49432000-49435800	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
42	chr3:49432200-49435400	Weak transcription	Psoas Muscle	Psoas
43	chr3:49432400-49436200	Enhancers	Primary T killer memory cells from peripheral blood	blood
44	chr3:49432400-49436800	Weak transcription	NH-A	brain
45	chr3:49432400-49438000	Weak transcription	Placenta Amnion	Placenta Amnion
46	chr3:49433000-49436000	Strong transcription	Hela-S3	cervix
47	chr3:49433000-49436800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr3:49433200-49435400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr3:49433200-49435400	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr3:49433200-49436000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

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