Variant report

Variant	rs6766297
Chromosome Location	chr3:49419143-49419144
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs11717485	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1522929	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1568663	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17080495	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17080510	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17080567	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1996874	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2131107	1.00[EUR][1000 genomes]
rs2311794	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2311801	1.00[EUR][1000 genomes]
rs2329024	1.00[EUR][1000 genomes]
rs28615670	1.00[EUR][1000 genomes]
rs3870334	1.00[EUR][1000 genomes]
rs3870340	1.00[EUR][1000 genomes]
rs3912831	1.00[EUR][1000 genomes]
rs4241409	1.00[AMR][1000 genomes]
rs4452334	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4527417	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4855856	1.00[EUR][1000 genomes]
rs4855857	1.00[EUR][1000 genomes]
rs4855870	1.00[AMR][1000 genomes]
rs4855872	1.00[EUR][1000 genomes]
rs4855874	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4855875	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4855876	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4855878	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4855879	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55808753	1.00[AMR][1000 genomes]
rs55990645	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56101322	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56760510	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56897974	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58998762	1.00[EUR][1000 genomes]
rs60011446	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61744082	1.00[EUR][1000 genomes]
rs61749312	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6446270	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6446271	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6446273	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6446276	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6446278	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6446279	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6446281	1.00[EUR][1000 genomes]
rs6446282	1.00[EUR][1000 genomes]
rs6446283	1.00[EUR][1000 genomes]
rs6787665	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6793124	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6797164	1.00[AMR][1000 genomes]
rs72936890	1.00[EUR][1000 genomes]
rs73830703	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73830704	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73830705	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73830706	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73831434	1.00[EUR][1000 genomes]
rs73831435	1.00[EUR][1000 genomes]
rs73831436	1.00[EUR][1000 genomes]
rs73831437	1.00[EUR][1000 genomes]
rs73831438	1.00[EUR][1000 genomes]
rs73833525	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7646393	1.00[EUR][1000 genomes]
rs8179172	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9811460	1.00[EUR][1000 genomes]
rs9814413	1.00[EUR][1000 genomes]
rs9830627	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9834209	0.85[AFR][1000 genomes]
rs9837396	1.00[EUR][1000 genomes]
rs9849446	1.00[EUR][1000 genomes]
rs9861805	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9869504	1.00[EUR][1000 genomes]
rs9875203	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9877045	1.00[EUR][1000 genomes]

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:49396800-49438800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:49397200-49423800	Weak transcription	Fetal Heart	heart
3	chr3:49399000-49448000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:49406000-49445200	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr3:49410600-49421800	Weak transcription	K562	blood
6	chr3:49411000-49434600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr3:49411200-49423200	Weak transcription	Primary hematopoietic stem cells	blood
8	chr3:49411200-49423800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr3:49413000-49421600	Weak transcription	Rectal Smooth Muscle	rectum
10	chr3:49413000-49422000	Weak transcription	Pancreas	Pancrea
11	chr3:49413000-49423200	Weak transcription	Brain Anterior Caudate	brain
12	chr3:49413000-49423800	Weak transcription	HUVEC	blood vessel
13	chr3:49413200-49419800	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr3:49413200-49423200	Weak transcription	Primary T cells from cord blood	blood
15	chr3:49413200-49423200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr3:49413200-49423200	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr3:49413200-49425400	Weak transcription	Brain Hippocampus Middle	brain
18	chr3:49413200-49425600	Weak transcription	Hela-S3	cervix
19	chr3:49413200-49431800	Weak transcription	Duodenum Mucosa	Duodenum
20	chr3:49413200-49432000	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr3:49413200-49432000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr3:49413200-49432000	Weak transcription	Fetal Kidney	kidney
23	chr3:49413200-49433200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr3:49413200-49435000	Weak transcription	Brain Angular Gyrus	brain
25	chr3:49413200-49441400	Weak transcription	Aorta	Aorta
26	chr3:49413200-49443000	Weak transcription	Brain Cingulate Gyrus	brain
27	chr3:49413200-49447400	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr3:49413400-49423200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr3:49413400-49425400	Weak transcription	Thymus	Thymus
30	chr3:49413400-49425400	Weak transcription	Dnd41	blood
31	chr3:49413400-49425600	Weak transcription	Fetal Intestine Large	intestine
32	chr3:49413400-49431800	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr3:49413400-49433600	Weak transcription	Brain Germinal Matrix	brain
34	chr3:49413400-49439000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr3:49413600-49430600	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr3:49413600-49432000	Weak transcription	Fetal Lung	lung
37	chr3:49413600-49433200	Weak transcription	Colonic Mucosa	Colon
38	chr3:49413600-49441000	Weak transcription	Fetal Brain Female	brain
39	chr3:49413800-49425600	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr3:49414400-49423200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
41	chr3:49414600-49421400	Enhancers	Primary T cells fromperipheralblood	blood
42	chr3:49414600-49424400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
43	chr3:49414600-49424400	Enhancers	Primary T helper cells PMA-I stimulated	--
44	chr3:49414800-49424200	Enhancers	Primary T helper cells fromperipheralblood	blood
45	chr3:49415400-49419800	Weak transcription	Primary B cells from cord blood	blood
46	chr3:49415400-49423200	Weak transcription	A549	lung
47	chr3:49415800-49425400	Weak transcription	Fetal Thymus	thymus
48	chr3:49416200-49419400	Weak transcription	Primary monocytes fromperipheralblood	blood
49	chr3:49416200-49419800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr3:49416200-49420000	Weak transcription	Esophagus	oesophagus

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