Variant report

Variant	rs4855879
Chromosome Location	chr3:49433401-49433402
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:49433245..49436928-chr3:49447117..49449989,7	K562	blood:
2	chr3:49376096..49378167-chr3:49432966..49435817,2	MCF-7	breast:
3	chr3:49377051..49379136-chr3:49433300..49435440,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000114316	Chromatin interaction
ENSG00000067560	Chromatin interaction
ENSG00000145022	Chromatin interaction

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs11130197	1.00[YRI][hapmap]
rs11708174	1.00[YRI][hapmap]
rs11717485	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1522929	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1568663	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17080495	0.91[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17080510	0.91[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17080567	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17080664	0.92[YRI][hapmap]
rs1996874	1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2131107	1.00[EUR][1000 genomes]
rs2311794	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2311801	0.91[YRI][hapmap];1.00[EUR][1000 genomes]
rs2329024	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs28615670	1.00[EUR][1000 genomes]
rs3870334	0.82[YRI][hapmap];1.00[EUR][1000 genomes]
rs3870340	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs3912831	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs4241409	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4452334	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4527417	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4855856	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs4855857	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs4855870	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4855872	1.00[EUR][1000 genomes]
rs4855874	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4855875	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4855876	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4855878	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55808753	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55990645	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56101322	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56760510	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56897974	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58998762	1.00[EUR][1000 genomes]
rs60011446	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61744082	1.00[EUR][1000 genomes]
rs61749312	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6446269	0.81[AFR][1000 genomes]
rs6446270	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6446271	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6446273	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6446276	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6446278	0.89[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6446279	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6446281	1.00[EUR][1000 genomes]
rs6446282	1.00[EUR][1000 genomes]
rs6446283	1.00[EUR][1000 genomes]
rs6762593	1.00[YRI][hapmap]
rs6766297	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6787665	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6793124	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6797164	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs72936890	1.00[EUR][1000 genomes]
rs73830703	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73830704	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73830705	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73830706	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73831434	1.00[EUR][1000 genomes]
rs73831435	1.00[EUR][1000 genomes]
rs73831436	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73831437	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73831438	1.00[EUR][1000 genomes]
rs73833525	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7646393	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs8179172	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9311441	0.83[AFR][1000 genomes]
rs9811460	1.00[EUR][1000 genomes]
rs9814413	1.00[EUR][1000 genomes]
rs9830627	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9834209	0.91[AFR][1000 genomes]
rs9837396	1.00[EUR][1000 genomes]
rs9849446	1.00[EUR][1000 genomes]
rs9861805	0.84[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9869504	1.00[EUR][1000 genomes]
rs9875203	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:49396800-49438800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:49399000-49448000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:49406000-49445200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr3:49411000-49434600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr3:49413200-49435000	Weak transcription	Brain Angular Gyrus	brain
6	chr3:49413200-49441400	Weak transcription	Aorta	Aorta
7	chr3:49413200-49443000	Weak transcription	Brain Cingulate Gyrus	brain
8	chr3:49413200-49447400	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr3:49413400-49433600	Weak transcription	Brain Germinal Matrix	brain
10	chr3:49413400-49439000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr3:49413600-49441000	Weak transcription	Fetal Brain Female	brain
12	chr3:49416200-49435200	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr3:49417800-49437800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr3:49422200-49443000	Weak transcription	Rectal Smooth Muscle	rectum
15	chr3:49424200-49434800	Weak transcription	Brain Anterior Caudate	brain
16	chr3:49424200-49435000	Weak transcription	Stomach Mucosa	stomach
17	chr3:49424200-49443400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr3:49424400-49435000	Weak transcription	Small Intestine	intestine
19	chr3:49425400-49435000	Strong transcription	Fetal Intestine Small	intestine
20	chr3:49425800-49437800	Weak transcription	Brain Hippocampus Middle	brain
21	chr3:49426000-49436600	Weak transcription	Gastric	stomach
22	chr3:49426000-49444000	Weak transcription	Esophagus	oesophagus
23	chr3:49426200-49437800	Weak transcription	Brain Substantia Nigra	brain
24	chr3:49426200-49443000	Weak transcription	NHLF	lung
25	chr3:49426800-49433600	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr3:49427000-49435000	Weak transcription	HSMMtube	muscle
27	chr3:49427000-49448400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr3:49427400-49435600	Strong transcription	Fetal Muscle Trunk	muscle
29	chr3:49428000-49436000	Strong transcription	GM12878-XiMat	blood
30	chr3:49428800-49438600	Strong transcription	Fetal Stomach	stomach
31	chr3:49429000-49437000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr3:49429000-49441800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr3:49429000-49447200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr3:49429200-49434600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr3:49429200-49434600	Strong transcription	Thymus	Thymus
36	chr3:49429400-49434200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr3:49429400-49435400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr3:49429400-49436000	Strong transcription	Fetal Thymus	thymus
39	chr3:49429600-49435000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr3:49430000-49434200	Strong transcription	Fetal Intestine Large	intestine
41	chr3:49430000-49435800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr3:49430000-49436000	Strong transcription	Dnd41	blood
43	chr3:49430200-49434400	Strong transcription	Monocytes-CD14+_RO01746	blood
44	chr3:49430200-49435200	Weak transcription	Pancreas	Pancrea
45	chr3:49430200-49436000	Genic enhancers	Primary T cells fromperipheralblood	blood
46	chr3:49430400-49435000	Strong transcription	Fetal Muscle Leg	muscle
47	chr3:49430400-49435200	Genic enhancers	Primary T helper cells fromperipheralblood	blood
48	chr3:49430600-49434000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr3:49430600-49436000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr3:49430800-49439200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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