Variant report

Variant	rs6446283
Chromosome Location	chr3:49572894-49572895
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:49565205..49567753-chr3:49570850..49573509,2	K562	blood:
2	chr3:49572260..49575094-chr3:49709168..49713049,4	K562	blood:
3	chr3:49572703..49574370-chr3:49703529..49706014,2	K562	blood:

Variant related genes	Relation type
ENSG00000164062	Chromatin interaction

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs11130197	0.91[YRI][hapmap]
rs11708174	0.91[YRI][hapmap]
rs11717485	1.00[EUR][1000 genomes]
rs1522929	0.91[YRI][hapmap];1.00[EUR][1000 genomes]
rs1568663	1.00[EUR][1000 genomes]
rs17080495	1.00[EUR][1000 genomes]
rs17080510	1.00[EUR][1000 genomes]
rs17080567	1.00[EUR][1000 genomes]
rs17080664	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs1996874	0.91[YRI][hapmap];1.00[EUR][1000 genomes]
rs2131107	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2311794	1.00[EUR][1000 genomes]
rs2311801	0.87[LWK][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2329024	0.87[LWK][hapmap];0.91[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3870334	0.87[LWK][hapmap];0.91[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3870340	0.89[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3912831	1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4241409	0.91[YRI][hapmap]
rs4452334	1.00[EUR][1000 genomes]
rs4855856	0.91[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4855857	0.87[LWK][hapmap];0.91[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4855872	1.00[EUR][1000 genomes]
rs4855874	1.00[EUR][1000 genomes]
rs4855875	1.00[EUR][1000 genomes]
rs4855876	1.00[EUR][1000 genomes]
rs4855878	1.00[EUR][1000 genomes]
rs4855879	0.91[YRI][hapmap];1.00[EUR][1000 genomes]
rs55990645	1.00[EUR][1000 genomes]
rs56101322	1.00[EUR][1000 genomes]
rs56760510	1.00[EUR][1000 genomes]
rs56897974	1.00[EUR][1000 genomes]
rs59579780	1.00[AMR][1000 genomes]
rs60011446	1.00[EUR][1000 genomes]
rs61749312	1.00[EUR][1000 genomes]
rs6446270	1.00[EUR][1000 genomes]
rs6446271	1.00[EUR][1000 genomes]
rs6446273	0.91[YRI][hapmap];1.00[EUR][1000 genomes]
rs6446276	1.00[EUR][1000 genomes]
rs6446278	0.88[YRI][hapmap];1.00[EUR][1000 genomes]
rs6446279	1.00[EUR][1000 genomes]
rs6446281	1.00[EUR][1000 genomes]
rs6446282	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6762593	0.87[LWK][hapmap];0.91[YRI][hapmap]
rs6766297	1.00[EUR][1000 genomes]
rs6787665	1.00[EUR][1000 genomes]
rs6793124	1.00[EUR][1000 genomes]
rs6797164	0.87[YRI][hapmap]
rs73830703	1.00[EUR][1000 genomes]
rs73830704	1.00[EUR][1000 genomes]
rs73830705	1.00[EUR][1000 genomes]
rs73830706	1.00[EUR][1000 genomes]
rs73831434	1.00[EUR][1000 genomes]
rs73831435	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73831436	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73831437	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73831438	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73831439	1.00[AMR][1000 genomes]
rs73831440	1.00[AMR][1000 genomes]
rs73831441	1.00[AMR][1000 genomes]
rs73831442	1.00[AMR][1000 genomes]
rs73834006	1.00[AMR][1000 genomes]
rs7646393	0.91[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8179172	0.87[LWK][hapmap];0.91[YRI][hapmap];1.00[EUR][1000 genomes]
rs9830627	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834687	chr3:49448632-49631788	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:49546200-49577000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr3:49548400-49577400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr3:49567800-49574000	Strong transcription	Fetal Intestine Small	intestine
4	chr3:49568000-49573400	Strong transcription	Fetal Stomach	stomach
5	chr3:49568200-49577000	Weak transcription	HMEC	breast
6	chr3:49568400-49573600	Weak transcription	Right Atrium	heart
7	chr3:49568800-49573400	Genic enhancers	Fetal Muscle Trunk	muscle
8	chr3:49568800-49573400	Strong transcription	Placenta	Placenta
9	chr3:49568800-49576800	Weak transcription	Fetal Heart	heart
10	chr3:49569000-49576800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr3:49569200-49573200	Weak transcription	Osteobl	bone
12	chr3:49569600-49573200	Weak transcription	NHDF-Ad	bronchial
13	chr3:49569800-49577000	Weak transcription	Fetal Lung	lung
14	chr3:49569800-49577400	Weak transcription	Fetal Kidney	kidney
15	chr3:49570000-49576800	Weak transcription	K562	blood
16	chr3:49570200-49576800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr3:49570200-49577200	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr3:49570200-49577400	Weak transcription	Small Intestine	intestine
19	chr3:49570400-49574600	Genic enhancers	Fetal Muscle Leg	muscle
20	chr3:49570400-49577400	Weak transcription	GM12878-XiMat	blood
21	chr3:49570600-49573400	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr3:49570600-49574000	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr3:49570600-49574000	Weak transcription	Duodenum Mucosa	Duodenum
24	chr3:49570600-49577000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr3:49570600-49577000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
26	chr3:49570600-49577400	Weak transcription	HUVEC	blood vessel
27	chr3:49570800-49574600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr3:49570800-49574600	Enhancers	Ovary	ovary
29	chr3:49570800-49577000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr3:49570800-49577000	Weak transcription	Primary T helper cells PMA-I stimulated	--
31	chr3:49570800-49577000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr3:49570800-49577000	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr3:49570800-49577000	Weak transcription	NHEK	skin
34	chr3:49570800-49577200	Weak transcription	Primary hematopoietic stem cells	blood
35	chr3:49570800-49577400	Weak transcription	Aorta	Aorta
36	chr3:49571000-49574800	Enhancers	HSMM	muscle
37	chr3:49571000-49576800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr3:49571000-49576800	Weak transcription	Rectal Smooth Muscle	rectum
39	chr3:49571000-49577000	Weak transcription	Primary B cells from peripheral blood	blood
40	chr3:49571000-49577000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr3:49571000-49577400	Weak transcription	Primary monocytes fromperipheralblood	blood
42	chr3:49571200-49573600	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
43	chr3:49571200-49576800	Weak transcription	Dnd41	blood
44	chr3:49571200-49577000	Weak transcription	HUES64 Cell Line	embryonic stem cell
45	chr3:49571200-49577000	Weak transcription	Placenta Amnion	Placenta Amnion
46	chr3:49571200-49577400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr3:49571200-49577400	Weak transcription	Primary B cells from cord blood	blood
48	chr3:49571200-49577400	Weak transcription	A549	lung
49	chr3:49571400-49573000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr3:49571400-49573400	Enhancers	Muscle Satellite Cultured Cells	--

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