Variant report

Variant	rs56897974
Chromosome Location	chr3:49408928-49408929
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:49408606-49408957	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:49406483..49409240-chr3:49424469..49426379,2	K562	blood:
2	chr3:49406633..49409699-chr3:49449067..49451107,3	K562	blood:

Variant related genes	Relation type
RHOA-IT1	TF binding region
ENSG00000067560	Chromatin interaction
ENSG00000145022	Chromatin interaction

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs11130201	0.89[AFR][1000 genomes]
rs11717485	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1522929	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1568663	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17080495	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17080510	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17080567	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17080664	0.92[AFR][1000 genomes]
rs1996874	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2131107	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2311794	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2311801	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2329024	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28615670	1.00[EUR][1000 genomes]
rs3870334	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3870340	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3912831	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4241409	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4452334	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4527417	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4855856	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4855857	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4855870	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4855872	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4855874	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4855875	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4855876	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4855878	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4855879	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55677747	0.81[AFR][1000 genomes]
rs55808753	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55990645	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56101322	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56760510	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58998762	1.00[EUR][1000 genomes]
rs59579780	0.86[AFR][1000 genomes]
rs60011446	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61744082	1.00[EUR][1000 genomes]
rs61749312	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6446269	0.97[AFR][1000 genomes]
rs6446270	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6446271	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6446273	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6446276	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6446278	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6446279	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6446280	0.92[AFR][1000 genomes]
rs6446281	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6446282	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6446283	1.00[EUR][1000 genomes]
rs6766297	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6787665	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6793124	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6797164	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72936810	1.00[EUR][1000 genomes]
rs72936890	1.00[EUR][1000 genomes]
rs73830703	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73830704	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73830705	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73830706	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73831434	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73831435	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73831436	1.00[EUR][1000 genomes]
rs73831437	1.00[EUR][1000 genomes]
rs73831438	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73831439	0.86[AFR][1000 genomes]
rs73831440	0.86[AFR][1000 genomes]
rs73831441	0.86[AFR][1000 genomes]
rs73831442	0.92[AFR][1000 genomes]
rs73833525	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7646393	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8179172	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9311441	1.00[AFR][1000 genomes]
rs9811460	1.00[EUR][1000 genomes]
rs9814413	1.00[EUR][1000 genomes]
rs9830627	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9837396	1.00[EUR][1000 genomes]
rs9849446	1.00[EUR][1000 genomes]
rs9861805	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9869504	1.00[EUR][1000 genomes]
rs9875203	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9877045	1.00[EUR][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:49396400-49413600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr3:49396400-49418600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr3:49396600-49410200	Weak transcription	Psoas Muscle	Psoas
4	chr3:49396600-49413200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr3:49396600-49413200	Strong transcription	Fetal Muscle Trunk	muscle
6	chr3:49396600-49413800	Strong transcription	Primary B cells from peripheral blood	blood
7	chr3:49396600-49414400	Weak transcription	Fetal Brain Male	brain
8	chr3:49396800-49410800	Strong transcription	Primary neutrophils fromperipheralblood	blood
9	chr3:49396800-49412800	Strong transcription	Primary T helper cells fromperipheralblood	blood
10	chr3:49396800-49413200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr3:49396800-49413400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr3:49396800-49413400	Strong transcription	Thymus	Thymus
13	chr3:49396800-49413600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr3:49396800-49438800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr3:49397000-49412800	Strong transcription	Lung	lung
16	chr3:49397000-49413000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr3:49397000-49413200	Strong transcription	Adipose Nuclei	Adipose
18	chr3:49397000-49415200	Strong transcription	Fetal Stomach	stomach
19	chr3:49397200-49413400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr3:49397200-49423800	Weak transcription	Fetal Heart	heart
21	chr3:49397400-49410400	Strong transcription	Monocytes-CD14+_RO01746	blood
22	chr3:49397400-49410600	Strong transcription	Primary monocytes fromperipheralblood	blood
23	chr3:49397400-49411200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr3:49397400-49413200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr3:49397400-49413200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr3:49397400-49413400	Strong transcription	Fetal Intestine Large	intestine
27	chr3:49397400-49413400	Strong transcription	Fetal Muscle Leg	muscle
28	chr3:49397400-49413400	Strong transcription	Placenta	Placenta
29	chr3:49397400-49416400	Strong transcription	Fetal Intestine Small	intestine
30	chr3:49397600-49413200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr3:49397600-49413200	Strong transcription	Spleen	Spleen
32	chr3:49397600-49413600	Strong transcription	HUES6 Cell Line	embryonic stem cell
33	chr3:49397800-49409000	Weak transcription	Fetal Kidney	kidney
34	chr3:49397800-49413200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr3:49397800-49413600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
36	chr3:49397800-49413800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr3:49397800-49415800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr3:49398800-49410600	Weak transcription	Small Intestine	intestine
39	chr3:49399000-49448000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr3:49400600-49413200	Strong transcription	Primary T cells from cord blood	blood
41	chr3:49400800-49413600	Strong transcription	Fetal Thymus	thymus
42	chr3:49401200-49413200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
43	chr3:49401200-49413200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr3:49401400-49410800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr3:49401400-49413800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr3:49401600-49409200	Weak transcription	Right Ventricle	heart
47	chr3:49401600-49413400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr3:49401600-49413400	Strong transcription	Dnd41	blood
49	chr3:49401600-49413600	Strong transcription	Osteobl	bone
50	chr3:49401600-49415200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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