Variant report

Variant	rs56101322
Chromosome Location	chr3:49389143-49389144
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:49387116..49389894-chr3:49449590..49451097,2	K562	blood:
2	chr3:49376884..49378442-chr3:49388681..49390711,2	MCF-7	breast:
3	chr3:49388313..49390760-chr3:49397473..49400161,2	K562	blood:

Variant related genes	Relation type
ENSG00000067560	Chromatin interaction
ENSG00000114316	Chromatin interaction
ENSG00000145022	Chromatin interaction

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs11130201	0.89[AFR][1000 genomes]
rs11717485	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1522929	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1568663	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17080495	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17080510	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17080567	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17080664	0.92[AFR][1000 genomes]
rs1996874	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2131107	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2311794	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2311801	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2329024	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28615670	1.00[EUR][1000 genomes]
rs3870334	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3870340	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3912831	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4241409	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4452334	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4527417	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4855856	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4855857	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4855870	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4855872	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4855874	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4855875	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4855876	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4855878	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4855879	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55677747	0.81[AFR][1000 genomes]
rs55808753	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55990645	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56760510	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56897974	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58998762	1.00[EUR][1000 genomes]
rs59579780	0.86[AFR][1000 genomes]
rs60011446	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61744082	1.00[EUR][1000 genomes]
rs61749312	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6446269	0.97[AFR][1000 genomes]
rs6446270	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6446271	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6446273	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6446276	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6446278	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6446279	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6446280	0.92[AFR][1000 genomes]
rs6446281	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6446282	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6446283	1.00[EUR][1000 genomes]
rs6766297	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6787665	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6793124	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6797164	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72934290	1.00[ASN][1000 genomes]
rs72936804	1.00[EUR][1000 genomes]
rs72936810	1.00[EUR][1000 genomes]
rs72936890	1.00[EUR][1000 genomes]
rs73830703	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73830704	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73830705	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73830706	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73831434	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73831435	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73831436	1.00[EUR][1000 genomes]
rs73831437	1.00[EUR][1000 genomes]
rs73831438	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73831439	0.86[AFR][1000 genomes]
rs73831440	0.86[AFR][1000 genomes]
rs73831441	0.86[AFR][1000 genomes]
rs73831442	0.92[AFR][1000 genomes]
rs73833525	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7646393	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8179172	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9311441	1.00[AFR][1000 genomes]
rs9811460	1.00[EUR][1000 genomes]
rs9814413	1.00[EUR][1000 genomes]
rs9830627	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9833422	1.00[EUR][1000 genomes]
rs9837396	1.00[EUR][1000 genomes]
rs9849446	1.00[EUR][1000 genomes]
rs9861805	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9869504	1.00[EUR][1000 genomes]
rs9875203	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9877045	1.00[EUR][1000 genomes]

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:49378600-49390000	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr3:49378600-49392000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr3:49379000-49392000	Weak transcription	Left Ventricle	heart
4	chr3:49379800-49392800	Weak transcription	Thymus	Thymus
5	chr3:49381600-49393000	Weak transcription	Right Atrium	heart
6	chr3:49383000-49389200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr3:49383000-49389400	Weak transcription	Spleen	Spleen
8	chr3:49383000-49393600	Weak transcription	Primary T cells from cord blood	blood
9	chr3:49383200-49391800	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr3:49383200-49392400	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr3:49383400-49391400	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr3:49384600-49392000	Weak transcription	Fetal Muscle Leg	muscle
13	chr3:49384600-49392400	Weak transcription	Fetal Muscle Trunk	muscle
14	chr3:49384800-49391800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr3:49385800-49389600	Enhancers	Fetal Intestine Small	intestine
16	chr3:49385800-49390200	Enhancers	Fetal Intestine Large	intestine
17	chr3:49386400-49390200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr3:49386400-49390800	Enhancers	Primary hematopoietic stem cells	blood
19	chr3:49386400-49390800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr3:49386400-49390800	Enhancers	Adipose Nuclei	Adipose
21	chr3:49386400-49390800	Enhancers	K562	blood
22	chr3:49386800-49390400	Enhancers	Placenta	Placenta
23	chr3:49387000-49389200	Weak transcription	Fetal Kidney	kidney
24	chr3:49387000-49393000	Weak transcription	Aorta	Aorta
25	chr3:49387200-49389800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr3:49387200-49391400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr3:49387200-49392800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr3:49387400-49389200	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr3:49387400-49392800	Weak transcription	Stomach Smooth Muscle	stomach
30	chr3:49387400-49393000	Weak transcription	Right Ventricle	heart
31	chr3:49387400-49393800	Weak transcription	Gastric	stomach
32	chr3:49387600-49390800	Enhancers	Primary B cells from cord blood	blood
33	chr3:49387800-49390000	Enhancers	Duodenum Mucosa	Duodenum
34	chr3:49387800-49393000	Weak transcription	Dnd41	blood
35	chr3:49388000-49389200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr3:49388000-49390800	Enhancers	Esophagus	oesophagus
37	chr3:49388000-49391400	Enhancers	GM12878-XiMat	blood
38	chr3:49388200-49389200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr3:49388200-49389400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr3:49388200-49389600	Enhancers	Small Intestine	intestine
41	chr3:49388200-49390200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr3:49388200-49390200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr3:49388200-49390200	Enhancers	Liver	Liver
44	chr3:49388200-49390400	Enhancers	HMEC	breast
45	chr3:49388200-49390600	Enhancers	HSMM	muscle
46	chr3:49388200-49390800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr3:49388200-49390800	Enhancers	Primary B cells from peripheral blood	blood
48	chr3:49388200-49390800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
49	chr3:49388200-49390800	Enhancers	NHLF	lung
50	chr3:49388200-49390800	Enhancers	Osteobl	bone

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