Variant report

Variant	rs73831442
Chromosome Location	chr3:49610621-49610622
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:49603222..49606574-chr3:49608966..49612068,4	K562	blood:
2	chr3:49598309..49602377-chr3:49605664..49611011,5	K562	blood:
3	chr3:49609338..49612017-chr3:49707292..49709835,2	K562	blood:

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs11130201	0.92[AFR][1000 genomes]
rs11717485	0.92[AFR][1000 genomes]
rs1522929	0.92[AFR][1000 genomes]
rs1568663	0.97[AFR][1000 genomes]
rs17080495	0.86[AFR][1000 genomes]
rs17080510	0.87[AFR][1000 genomes]
rs17080567	0.86[AFR][1000 genomes]
rs17080664	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1996874	0.87[AFR][1000 genomes]
rs2131107	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2311794	0.92[AFR][1000 genomes]
rs2311801	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2329024	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3870334	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3870340	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3912831	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4241409	0.92[AFR][1000 genomes]
rs4452334	0.92[AFR][1000 genomes]
rs4855856	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4855857	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4855870	0.92[AFR][1000 genomes]
rs4855872	0.82[AFR][1000 genomes]
rs4855874	0.92[AFR][1000 genomes]
rs4855875	0.92[AFR][1000 genomes]
rs4855878	0.92[AFR][1000 genomes]
rs55808753	0.92[AFR][1000 genomes]
rs55990645	0.89[AFR][1000 genomes]
rs56101322	0.92[AFR][1000 genomes]
rs56897974	0.92[AFR][1000 genomes]
rs59579780	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60011446	0.92[AFR][1000 genomes]
rs6446269	0.89[AFR][1000 genomes]
rs6446270	0.92[AFR][1000 genomes]
rs6446271	0.92[AFR][1000 genomes]
rs6446273	0.92[AFR][1000 genomes]
rs6446276	0.92[AFR][1000 genomes]
rs6446279	0.97[AFR][1000 genomes]
rs6446280	0.94[AFR][1000 genomes]
rs6446281	0.87[AFR][1000 genomes]
rs6446282	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6446283	1.00[AMR][1000 genomes]
rs6787665	0.86[AFR][1000 genomes]
rs6793124	0.87[AFR][1000 genomes]
rs73830703	0.92[AFR][1000 genomes]
rs73830704	0.92[AFR][1000 genomes]
rs73830705	0.92[AFR][1000 genomes]
rs73830706	0.92[AFR][1000 genomes]
rs73831434	0.89[AFR][1000 genomes]
rs73831435	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831436	1.00[AMR][1000 genomes]
rs73831437	1.00[AMR][1000 genomes]
rs73831438	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831439	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831440	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831441	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73834006	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7646393	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8179172	0.92[AFR][1000 genomes]
rs9311441	0.92[AFR][1000 genomes]
rs9830627	0.97[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834687	chr3:49448632-49631788	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:49596000-49615000	Weak transcription	Brain Germinal Matrix	brain
2	chr3:49596000-49616800	Weak transcription	Fetal Brain Female	brain
3	chr3:49601200-49612200	Weak transcription	Brain Cingulate Gyrus	brain
4	chr3:49608600-49615600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr3:49610600-49611000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood

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