The 2.0 version of rSNPBase

Variant report

Variant rs9837396
Chromosome Location chr3:49275861-49275862
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:48 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:49266200-49292600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
2 chr3:49270200-49283000 Weak transcription Ovary ovary
3 chr3:49272200-49276000 Weak transcription Fetal Heart heart
4 chr3:49272400-49277000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
5 chr3:49273800-49276000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
6 chr3:49273800-49278400 Enhancers Fetal Adrenal Gland Adrenal Gland
7 chr3:49274400-49277800 Weak transcription Osteobl bone
8 chr3:49274600-49278200 Enhancers Primary monocytes fromperipheralblood blood
9 chr3:49275400-49276000 ZNF genes & repeats H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
10 chr3:49275400-49276000 Enhancers Adipose Nuclei Adipose
11 chr3:49275400-49276000 Enhancers Fetal Intestine Large intestine
12 chr3:49275400-49276000 Flanking Active TSS Monocytes-CD14+_RO01746 blood
13 chr3:49275400-49276200 ZNF genes & repeats Aorta Aorta
14 chr3:49275400-49276200 Strong transcription Fetal Muscle Leg muscle
15 chr3:49275400-49276400 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
16 chr3:49275400-49276400 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
17 chr3:49275400-49276400 Enhancers HepG2 liver
18 chr3:49275400-49276600 Enhancers Skeletal Muscle Male skeletal muscle
19 chr3:49275400-49276800 Enhancers HMEC breast
20 chr3:49275400-49277000 Enhancers Primary B cells from peripheral blood blood
21 chr3:49275400-49277000 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
22 chr3:49275400-49277000 Enhancers Rectal Smooth Muscle rectum
23 chr3:49275400-49277200 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
24 chr3:49275400-49277400 Enhancers Primary B cells from cord blood blood
25 chr3:49275400-49277400 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
26 chr3:49275400-49277600 Enhancers Primary hematopoietic stem cells blood
27 chr3:49275400-49278000 Strong transcription Fetal Stomach stomach
28 chr3:49275400-49278200 Enhancers Primary hematopoietic stem cells short term culture blood
29 chr3:49275600-49276000 Enhancers NHEK skin
30 chr3:49275600-49276200 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
31 chr3:49275600-49276400 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
32 chr3:49275600-49276400 Flanking Active TSS K562 blood
33 chr3:49275600-49276600 ZNF genes & repeats Placenta Placenta
34 chr3:49275800-49276000 Flanking Active TSS Duodenum Smooth Muscle Duodenum
35 chr3:49275800-49276000 Enhancers Left Ventricle heart
36 chr3:49275800-49276000 ZNF genes & repeats Lung lung
37 chr3:49275800-49276000 Enhancers Right Ventricle heart
38 chr3:49275800-49276000 ZNF genes & repeats NHLF lung
39 chr3:49275800-49276200 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
40 chr3:49275800-49276200 Enhancers Colon Smooth Muscle Colon
41 chr3:49275800-49276400 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
42 chr3:49275800-49276400 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
43 chr3:49275800-49276400 Flanking Active TSS Foreskin Keratinocyte Primary Cells skin02 Skin
44 chr3:49275800-49276400 Strong transcription Fetal Muscle Trunk muscle
45 chr3:49275800-49276400 Enhancers Pancreas Pancrea
46 chr3:49275800-49276400 ZNF genes & repeats GM12878-XiMat blood
47 chr3:49275800-49276600 Flanking Active TSS Primary neutrophils fromperipheralblood blood
48 chr3:49275800-49277000 Enhancers Skeletal Muscle Female skeletal muscle

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Last update: Aug 31, 2015