Variant report

Variant	rs9820609
Chromosome Location	chr3:48981596-48981597
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:48981034..48982977-chr3:49056933..49058838,2	K562	blood:

Variant related genes	Relation type
ENSG00000178057	Chromatin interaction
ENSG00000178149	Chromatin interaction
ENSG00000199032	Chromatin interaction
ENSG00000207605	Chromatin interaction

rs_ID	r²[population]
rs13318132	1.00[ASW][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs14828	1.00[EUR][1000 genomes]
rs28523319	1.00[EUR][1000 genomes]
rs28615670	1.00[EUR][1000 genomes]
rs4527417	1.00[EUR][1000 genomes]
rs58708931	1.00[EUR][1000 genomes]
rs58914641	1.00[EUR][1000 genomes]
rs58998762	1.00[EUR][1000 genomes]
rs60338814	1.00[EUR][1000 genomes]
rs60352528	1.00[EUR][1000 genomes]
rs61008775	1.00[EUR][1000 genomes]
rs61744082	1.00[EUR][1000 genomes]
rs72930094	1.00[EUR][1000 genomes]
rs72931155	1.00[EUR][1000 genomes]
rs72931157	1.00[EUR][1000 genomes]
rs72931171	1.00[EUR][1000 genomes]
rs72934791	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72936804	1.00[EUR][1000 genomes]
rs72936810	1.00[EUR][1000 genomes]
rs72936890	1.00[EUR][1000 genomes]
rs73830478	1.00[EUR][1000 genomes]
rs73833525	1.00[EUR][1000 genomes]
rs9811460	1.00[EUR][1000 genomes]
rs9814413	1.00[EUR][1000 genomes]
rs9833422	1.00[EUR][1000 genomes]
rs9837396	1.00[EUR][1000 genomes]
rs9849446	1.00[EUR][1000 genomes]
rs9860187	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs9861805	1.00[EUR][1000 genomes]
rs9869504	1.00[EUR][1000 genomes]
rs9875203	1.00[EUR][1000 genomes]
rs9876812	1.00[EUR][1000 genomes]
rs9877045	1.00[ASW][hapmap];0.88[LWK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs9882714	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:48957400-49003800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:48962000-49000400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr3:48965200-49004200	Weak transcription	Colonic Mucosa	Colon
4	chr3:48965400-49000000	Weak transcription	Esophagus	oesophagus
5	chr3:48965800-48995400	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr3:48965800-49000000	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr3:48965800-49004000	Weak transcription	Fetal Brain Male	brain
8	chr3:48966000-48986000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr3:48966000-49008000	Weak transcription	Fetal Kidney	kidney
10	chr3:48966600-48986200	Weak transcription	NHLF	lung
11	chr3:48966800-48986200	Weak transcription	HMEC	breast
12	chr3:48967400-48994800	Weak transcription	Gastric	stomach
13	chr3:48967600-48983400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr3:48968000-48997200	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr3:48968200-48997200	Weak transcription	NHDF-Ad	bronchial
16	chr3:48970400-48982200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr3:48970400-48982200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr3:48970400-48982400	Weak transcription	Brain Cingulate Gyrus	brain
19	chr3:48970400-48984000	Weak transcription	Brain Angular Gyrus	brain
20	chr3:48970400-49004400	Weak transcription	Pancreas	Pancrea
21	chr3:48970600-48991600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr3:48970800-48986600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr3:48970800-48991000	Weak transcription	Lung	lung
24	chr3:48970800-49002000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr3:48971000-48982200	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr3:48971000-48994800	Weak transcription	Spleen	Spleen
27	chr3:48971400-48986200	Weak transcription	Brain Anterior Caudate	brain
28	chr3:48971400-48991000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr3:48971400-48991000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr3:48971600-48993800	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr3:48972000-49000400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr3:48972200-48982600	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr3:48972400-48982000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr3:48972400-48982400	Weak transcription	HSMMtube	muscle
35	chr3:48972400-48991200	Weak transcription	Adipose Nuclei	Adipose
36	chr3:48972400-48995400	Weak transcription	Brain Germinal Matrix	brain
37	chr3:48972400-48995400	Weak transcription	Ovary	ovary
38	chr3:48972800-48982400	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr3:48972800-48991200	Weak transcription	Primary neutrophils fromperipheralblood	blood
40	chr3:48973000-48982000	Weak transcription	Rectal Smooth Muscle	rectum
41	chr3:48973000-48983000	Weak transcription	Fetal Lung	lung
42	chr3:48973200-48982200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr3:48973200-48982400	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr3:48973400-48982000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr3:48973400-48982000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr3:48973400-48982400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
47	chr3:48973400-48983400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr3:48973400-48986200	Weak transcription	Brain Substantia Nigra	brain
49	chr3:48973400-48986600	Weak transcription	NH-A	brain
50	chr3:48973400-48986800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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