Variant report

Variant	rs9860187
Chromosome Location	chr3:48816600-48816601
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs13318132	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs14828	1.00[EUR][1000 genomes]
rs28523319	1.00[EUR][1000 genomes]
rs35741290	1.00[CHD][hapmap]
rs35989076	1.00[CHD][hapmap]
rs55782175	1.00[EUR][1000 genomes]
rs58708931	1.00[EUR][1000 genomes]
rs58835493	1.00[EUR][1000 genomes]
rs58914641	1.00[EUR][1000 genomes]
rs59352296	1.00[EUR][1000 genomes]
rs60338814	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60352528	1.00[EUR][1000 genomes]
rs61008775	1.00[EUR][1000 genomes]
rs6791777	1.00[EUR][1000 genomes]
rs6796790	0.82[YRI][hapmap]
rs6801211	0.81[YRI][hapmap]
rs72930094	1.00[EUR][1000 genomes]
rs72931155	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72931157	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72931171	1.00[EUR][1000 genomes]
rs72934791	1.00[EUR][1000 genomes]
rs72936804	1.00[EUR][1000 genomes]
rs72936810	1.00[EUR][1000 genomes]
rs73830466	1.00[EUR][1000 genomes]
rs73830478	1.00[EUR][1000 genomes]
rs73831577	1.00[EUR][1000 genomes]
rs73831579	1.00[EUR][1000 genomes]
rs73833525	1.00[EUR][1000 genomes]
rs9284885	0.82[YRI][hapmap]
rs9820609	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs9833422	1.00[EUR][1000 genomes]
rs9876812	1.00[EUR][1000 genomes]
rs9877045	1.00[EUR][1000 genomes]
rs9882714	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3407876	chr3:48774454-48823998	Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:48778200-48820200	Weak transcription	Fetal Kidney	kidney
2	chr3:48778200-48836600	Weak transcription	A549	lung
3	chr3:48778600-48826000	Weak transcription	Stomach Mucosa	stomach
4	chr3:48785400-48819200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr3:48789400-48844000	Weak transcription	Fetal Lung	lung
6	chr3:48789600-48820200	Weak transcription	Fetal Brain Male	brain
7	chr3:48789600-48820400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr3:48789600-48825800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr3:48789800-48819000	Weak transcription	Small Intestine	intestine
10	chr3:48790000-48819600	Weak transcription	NHLF	lung
11	chr3:48790200-48823600	Weak transcription	HMEC	breast
12	chr3:48791200-48825800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr3:48793200-48825800	Weak transcription	Fetal Thymus	thymus
14	chr3:48794800-48819600	Weak transcription	NHDF-Ad	bronchial
15	chr3:48795200-48819600	Weak transcription	Colonic Mucosa	Colon
16	chr3:48795200-48833600	Weak transcription	Psoas Muscle	Psoas
17	chr3:48797000-48823400	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr3:48802200-48832600	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr3:48802600-48819600	Weak transcription	Colon Smooth Muscle	Colon
20	chr3:48802800-48820400	Weak transcription	Primary hematopoietic stem cells	blood
21	chr3:48807600-48822000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr3:48808000-48819600	Weak transcription	Esophagus	oesophagus
23	chr3:48808000-48819600	Weak transcription	Right Ventricle	heart
24	chr3:48808000-48822200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr3:48808000-48825600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr3:48808200-48819800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr3:48808200-48820000	Weak transcription	Aorta	Aorta
28	chr3:48808200-48820800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr3:48808200-48821800	Weak transcription	HSMMtube	muscle
30	chr3:48808200-48827000	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr3:48808400-48819800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr3:48808400-48828000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr3:48809000-48819400	Weak transcription	Spleen	Spleen
34	chr3:48809000-48819600	Weak transcription	Gastric	stomach
35	chr3:48809000-48849400	Weak transcription	GM12878-XiMat	blood
36	chr3:48809600-48819600	Weak transcription	Rectal Smooth Muscle	rectum
37	chr3:48809600-48819800	Weak transcription	Ovary	ovary
38	chr3:48809600-48826200	Weak transcription	Primary B cells from cord blood	blood
39	chr3:48809800-48819400	Weak transcription	NH-A	brain
40	chr3:48809800-48819600	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr3:48809800-48819600	Weak transcription	Brain Germinal Matrix	brain
42	chr3:48809800-48819800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr3:48810000-48819600	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr3:48810000-48826000	Weak transcription	Brain Angular Gyrus	brain
45	chr3:48810000-48882800	Weak transcription	Fetal Brain Female	brain
46	chr3:48810200-48819200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr3:48810200-48819800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
48	chr3:48810200-48820000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr3:48810400-48817600	Weak transcription	Primary T helper cells fromperipheralblood	blood
50	chr3:48810400-48818800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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