Variant report

Variant	rs13318132
Chromosome Location	chr3:48918763-48918764
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11706983	0.90[ASW][hapmap];0.82[YRI][hapmap]
rs13434258	0.90[ASW][hapmap]
rs14828	1.00[EUR][1000 genomes]
rs28523319	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28615670	1.00[EUR][1000 genomes]
rs35064573	0.90[ASW][hapmap];0.82[YRI][hapmap]
rs4527417	1.00[EUR][1000 genomes]
rs58708931	1.00[EUR][1000 genomes]
rs58835493	1.00[EUR][1000 genomes]
rs58914641	1.00[EUR][1000 genomes]
rs58998762	1.00[EUR][1000 genomes]
rs59352296	1.00[EUR][1000 genomes]
rs60338814	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60352528	1.00[EUR][1000 genomes]
rs61008775	1.00[EUR][1000 genomes]
rs61744082	1.00[EUR][1000 genomes]
rs6791777	1.00[EUR][1000 genomes]
rs72930094	1.00[EUR][1000 genomes]
rs72931155	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72931157	1.00[EUR][1000 genomes]
rs72931171	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72934791	1.00[EUR][1000 genomes]
rs72936804	1.00[EUR][1000 genomes]
rs72936810	1.00[EUR][1000 genomes]
rs72936890	1.00[EUR][1000 genomes]
rs73830466	1.00[EUR][1000 genomes]
rs73830478	1.00[EUR][1000 genomes]
rs73833525	1.00[EUR][1000 genomes]
rs9811460	1.00[EUR][1000 genomes]
rs9814413	1.00[EUR][1000 genomes]
rs9820609	1.00[ASW][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs9833422	1.00[EUR][1000 genomes]
rs9834996	0.82[YRI][hapmap]
rs9849446	1.00[EUR][1000 genomes]
rs9860187	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs9875203	1.00[EUR][1000 genomes]
rs9876812	1.00[EUR][1000 genomes]
rs9877045	1.00[EUR][1000 genomes]
rs9882714	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3487342	chr3:48823957-48960475	Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
2	esv3487343	chr3:48823963-48960381	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:48889600-48935400	Weak transcription	Brain Germinal Matrix	brain
2	chr3:48894400-48923000	Strong transcription	Fetal Intestine Small	intestine
3	chr3:48894600-48918800	Weak transcription	HepG2	liver
4	chr3:48896400-48934400	Weak transcription	Brain Hippocampus Middle	brain
5	chr3:48896800-48934200	Weak transcription	Stomach Mucosa	stomach
6	chr3:48896800-48935000	Weak transcription	Brain Cingulate Gyrus	brain
7	chr3:48897000-48918800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr3:48897000-48921400	Weak transcription	Primary B cells from cord blood	blood
9	chr3:48897000-48928600	Weak transcription	Colon Smooth Muscle	Colon
10	chr3:48897000-48933600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr3:48897000-48934200	Weak transcription	Primary hematopoietic stem cells	blood
12	chr3:48897000-48934200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr3:48897200-48918800	Weak transcription	Ovary	ovary
14	chr3:48897200-48918800	Weak transcription	Psoas Muscle	Psoas
15	chr3:48897200-48923200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr3:48897200-48924400	Weak transcription	HSMMtube	muscle
17	chr3:48897200-48934200	Weak transcription	Colonic Mucosa	Colon
18	chr3:48897200-48935000	Weak transcription	NH-A	brain
19	chr3:48897200-48935200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr3:48897400-48918800	Weak transcription	Rectal Smooth Muscle	rectum
21	chr3:48897400-48921400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr3:48897400-48934600	Weak transcription	Brain Anterior Caudate	brain
23	chr3:48900000-48922400	Weak transcription	Fetal Muscle Trunk	muscle
24	chr3:48900200-48919000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr3:48900200-48919000	Weak transcription	Fetal Muscle Leg	muscle
26	chr3:48900200-48924200	Weak transcription	Placenta	Placenta
27	chr3:48900200-48932000	Weak transcription	Dnd41	blood
28	chr3:48900200-48932800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr3:48900200-48935000	Weak transcription	Esophagus	oesophagus
30	chr3:48900400-48919200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr3:48901000-48923200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr3:48902200-48924800	Weak transcription	Fetal Brain Female	brain
33	chr3:48902400-48921200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr3:48902600-48935000	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr3:48904000-48931200	Strong transcription	Primary monocytes fromperipheralblood	blood
36	chr3:48907000-48925400	Strong transcription	Duodenum Mucosa	Duodenum
37	chr3:48907800-48918800	Weak transcription	Fetal Thymus	thymus
38	chr3:48909000-48918800	Weak transcription	Lung	lung
39	chr3:48911400-48926800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr3:48912200-48923400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr3:48912600-48922000	Weak transcription	Primary B cells from peripheral blood	blood
42	chr3:48913000-48923400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr3:48913200-48920200	Strong transcription	Stomach Smooth Muscle	stomach
44	chr3:48914600-48922200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr3:48914600-48933600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
46	chr3:48914800-48923000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr3:48915400-48920600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr3:48915400-48922600	Weak transcription	Small Intestine	intestine
49	chr3:48915400-48928800	Weak transcription	HSMM	muscle
50	chr3:48916000-48925000	Strong transcription	Primary T helper cells fromperipheralblood	blood

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