Variant report

Variant	rs73830466
Chromosome Location	chr3:48659119-48659120
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10780032	1.00[EUR][1000 genomes]
rs11130169	1.00[EUR][1000 genomes]
rs11915428	1.00[EUR][1000 genomes]
rs13318132	1.00[EUR][1000 genomes]
rs14828	1.00[EUR][1000 genomes]
rs28523319	1.00[EUR][1000 genomes]
rs3924179	1.00[EUR][1000 genomes]
rs4858818	1.00[EUR][1000 genomes]
rs55782175	1.00[EUR][1000 genomes]
rs58708931	1.00[EUR][1000 genomes]
rs58835493	1.00[EUR][1000 genomes]
rs58914641	1.00[EUR][1000 genomes]
rs59352296	1.00[EUR][1000 genomes]
rs60338814	1.00[EUR][1000 genomes]
rs60352528	1.00[EUR][1000 genomes]
rs6442122	1.00[EUR][1000 genomes]
rs6791777	1.00[EUR][1000 genomes]
rs6793732	1.00[EUR][1000 genomes]
rs6801348	1.00[EUR][1000 genomes]
rs72930094	1.00[EUR][1000 genomes]
rs72931155	1.00[EUR][1000 genomes]
rs72931157	1.00[EUR][1000 genomes]
rs72931171	1.00[EUR][1000 genomes]
rs73830478	1.00[EUR][1000 genomes]
rs73831577	1.00[EUR][1000 genomes]
rs73831579	1.00[EUR][1000 genomes]
rs7633433	1.00[EUR][1000 genomes]
rs898226	1.00[EUR][1000 genomes]
rs9852211	1.00[EUR][1000 genomes]
rs9860187	1.00[EUR][1000 genomes]
rs9876812	1.00[EUR][1000 genomes]
rs9882714	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008232	chr3:48517121-48702416	Transcr. at gene 5' and 3' Active TSS Genic enhancers Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv523981	chr3:48520289-48721040	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	nsv834685	chr3:48565009-48745774	Strong transcription Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
4	nsv876762	chr3:48591481-48731487	Strong transcription Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
5	nsv818138	chr3:48610925-48731487	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
6	nsv590246	chr3:48628014-48721040	Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:48648400-48661200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr3:48649000-48672000	Weak transcription	Fetal Brain Male	brain
3	chr3:48651800-48662400	Weak transcription	NHLF	lung
4	chr3:48655000-48661200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr3:48655200-48662200	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr3:48655400-48659400	Enhancers	HepG2	liver
7	chr3:48655400-48659600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr3:48655400-48662800	Weak transcription	Esophagus	oesophagus
9	chr3:48655400-48662800	Weak transcription	Fetal Brain Female	brain
10	chr3:48655600-48662200	Weak transcription	Fetal Stomach	stomach
11	chr3:48655600-48663000	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr3:48655800-48661200	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr3:48656000-48661200	Weak transcription	Thymus	Thymus
14	chr3:48656000-48662400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr3:48656000-48664000	Weak transcription	Brain Germinal Matrix	brain
16	chr3:48656200-48662600	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr3:48656400-48663000	Weak transcription	HSMM	muscle
18	chr3:48656400-48663200	Weak transcription	Hela-S3	cervix
19	chr3:48656400-48664400	Weak transcription	HMEC	breast
20	chr3:48656400-48671400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr3:48656600-48660400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr3:48656600-48662200	Weak transcription	Osteobl	bone
23	chr3:48656600-48662600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr3:48656600-48662800	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr3:48656800-48661400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr3:48656800-48661400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr3:48656800-48662400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr3:48656800-48662600	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr3:48657000-48659200	Strong transcription	Dnd41	blood
30	chr3:48657000-48659600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr3:48657200-48659600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr3:48657200-48661800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr3:48657200-48664600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr3:48657400-48662600	Weak transcription	Liver	Liver
35	chr3:48657600-48661000	Weak transcription	Aorta	Aorta
36	chr3:48657600-48661200	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr3:48657600-48661800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr3:48657600-48662200	Weak transcription	Fetal Muscle Trunk	muscle
39	chr3:48657600-48662400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr3:48657800-48659200	Weak transcription	Primary neutrophils fromperipheralblood	blood
41	chr3:48657800-48661200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr3:48657800-48661600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr3:48657800-48661800	Weak transcription	NHEK	skin
44	chr3:48657800-48664200	Weak transcription	Pancreas	Pancrea
45	chr3:48657800-48670000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr3:48658000-48659400	Strong transcription	Spleen	Spleen
47	chr3:48658000-48659600	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr3:48658000-48659600	Strong transcription	Fetal Intestine Small	intestine
49	chr3:48658000-48661400	Weak transcription	Fetal Intestine Large	intestine
50	chr3:48658000-48661600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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