Variant report

Variant	rs72934343
Chromosome Location	chr11:76321468-76321469
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:76321340..76322129-chr11:76391843..76392519,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11236787	0.83[ASN][1000 genomes]
rs11827375	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12363012	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12364454	1.00[ASN][1000 genomes]
rs58107908	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72934333	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72934340	0.81[EUR][1000 genomes]
rs7951308	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043912	chr11:76301316-76439095	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv1039451	chr11:76301316-76440221	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	esv1810781	chr11:76311021-76464814	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76314600-76327000	Weak transcription	Gastric	stomach
2	chr11:76316200-76321800	Weak transcription	Pancreas	Pancrea
3	chr11:76316200-76322200	Weak transcription	Brain Angular Gyrus	brain
4	chr11:76316200-76325200	Weak transcription	Brain Anterior Caudate	brain
5	chr11:76316400-76326600	Weak transcription	Stomach Mucosa	stomach
6	chr11:76316800-76321800	Weak transcription	Psoas Muscle	Psoas
7	chr11:76317000-76327200	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr11:76317800-76322000	Weak transcription	Spleen	Spleen
9	chr11:76317800-76322200	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr11:76318000-76325000	Weak transcription	NHDF-Ad	bronchial
11	chr11:76318000-76325200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr11:76318600-76322000	Weak transcription	Primary B cells from cord blood	blood
13	chr11:76320200-76322600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr11:76320400-76322200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr11:76320400-76322600	Enhancers	Fetal Muscle Trunk	muscle
16	chr11:76320400-76322800	Enhancers	Fetal Stomach	stomach
17	chr11:76320400-76323000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr11:76320400-76323200	Enhancers	Fetal Muscle Leg	muscle
19	chr11:76320600-76321600	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr11:76320600-76321800	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr11:76320600-76322200	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr11:76320600-76322600	Enhancers	H1 Cell Line	embryonic stem cell
23	chr11:76320600-76322600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr11:76320600-76322800	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr11:76320600-76323200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr11:76320600-76323200	Enhancers	Fetal Heart	heart
27	chr11:76320800-76321800	Weak transcription	Brain Germinal Matrix	brain
28	chr11:76320800-76322400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr11:76320800-76322400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
30	chr11:76320800-76322400	Enhancers	Duodenum Smooth Muscle	Duodenum
31	chr11:76320800-76322600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr11:76320800-76322600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr11:76320800-76322600	Enhancers	Adipose Nuclei	Adipose
34	chr11:76320800-76322600	Enhancers	Ovary	ovary
35	chr11:76320800-76322600	Enhancers	Rectal Smooth Muscle	rectum
36	chr11:76320800-76322800	Enhancers	HUES6 Cell Line	embryonic stem cell
37	chr11:76320800-76322800	Enhancers	Colon Smooth Muscle	Colon
38	chr11:76320800-76322800	Enhancers	Left Ventricle	heart
39	chr11:76321000-76322000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr11:76321000-76322200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr11:76321000-76322400	Enhancers	iPS-20b Cell Line	embryonic stem cell
42	chr11:76321000-76322400	Enhancers	Primary hematopoietic stem cells	blood
43	chr11:76321000-76322400	Enhancers	Brain Inferior Temporal Lobe	brain
44	chr11:76321000-76322400	Enhancers	Lung	lung
45	chr11:76321000-76322400	Enhancers	Stomach Smooth Muscle	stomach
46	chr11:76321000-76322600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr11:76321000-76322800	Enhancers	Right Ventricle	heart
48	chr11:76321000-76323200	Enhancers	Skeletal Muscle Female	skeletal muscle
49	chr11:76321000-76323600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr11:76321000-76323600	Enhancers	Placenta	Placenta

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