Variant report

Variant	rs12363012
Chromosome Location	chr11:76330070-76330071
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10899238	0.88[AFR][1000 genomes]
rs11236787	0.83[ASN][1000 genomes]
rs11236806	0.80[AFR][1000 genomes]
rs11236808	0.83[AFR][1000 genomes]
rs11827375	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11827686	0.91[AFR][1000 genomes]
rs12364454	1.00[ASN][1000 genomes]
rs58107908	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72934333	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72934343	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7951308	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043912	chr11:76301316-76439095	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv1039451	chr11:76301316-76440221	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	esv1810781	chr11:76311021-76464814	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76326800-76332800	Weak transcription	Aorta	Aorta
2	chr11:76327400-76334200	Weak transcription	Esophagus	oesophagus
3	chr11:76327600-76331600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr11:76327600-76331600	Weak transcription	Colon Smooth Muscle	Colon
5	chr11:76327600-76332600	Weak transcription	Lung	lung
6	chr11:76328200-76332400	Weak transcription	Placenta	Placenta
7	chr11:76328400-76332600	Weak transcription	Fetal Heart	heart
8	chr11:76328400-76332600	Weak transcription	Spleen	Spleen
9	chr11:76328600-76331600	Weak transcription	NH-A	brain
10	chr11:76328600-76332600	Weak transcription	Left Ventricle	heart
11	chr11:76328600-76332600	Weak transcription	Right Ventricle	heart
12	chr11:76328600-76340400	Weak transcription	Right Atrium	heart
13	chr11:76328800-76332000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr11:76328800-76333000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr11:76329000-76331800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr11:76329000-76332400	Weak transcription	Ovary	ovary
17	chr11:76329200-76331600	Weak transcription	Fetal Stomach	stomach
18	chr11:76329200-76331800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr11:76329400-76331800	Weak transcription	NHLF	lung
20	chr11:76329400-76336600	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr11:76329600-76331800	Weak transcription	NHDF-Ad	bronchial
22	chr11:76329600-76331800	Weak transcription	Osteobl	bone
23	chr11:76329600-76332400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr11:76329800-76331800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr11:76329800-76332000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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