Variant report

Variant	rs11236806
Chromosome Location	chr11:76322252-76322253
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:76310504..76312351-chr11:76321930..76323768,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10793176	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10899237	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10899238	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11236798	0.93[CEU][hapmap];0.84[CHB][hapmap];0.87[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11236800	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11236808	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11605443	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11827686	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12363012	0.80[AFR][1000 genomes]
rs4438063	0.83[JPT][hapmap]
rs4485135	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4553390	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7942382	0.88[JPT][hapmap]
rs7943599	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7950468	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7951284	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9645696	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043912	chr11:76301316-76439095	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv1039451	chr11:76301316-76440221	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	esv1810781	chr11:76311021-76464814	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76314600-76327000	Weak transcription	Gastric	stomach
2	chr11:76316200-76325200	Weak transcription	Brain Anterior Caudate	brain
3	chr11:76316400-76326600	Weak transcription	Stomach Mucosa	stomach
4	chr11:76317000-76327200	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr11:76318000-76325000	Weak transcription	NHDF-Ad	bronchial
6	chr11:76318000-76325200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr11:76320200-76322600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr11:76320400-76322600	Enhancers	Fetal Muscle Trunk	muscle
9	chr11:76320400-76322800	Enhancers	Fetal Stomach	stomach
10	chr11:76320400-76323000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr11:76320400-76323200	Enhancers	Fetal Muscle Leg	muscle
12	chr11:76320600-76322600	Enhancers	H1 Cell Line	embryonic stem cell
13	chr11:76320600-76322600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr11:76320600-76322800	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr11:76320600-76323200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr11:76320600-76323200	Enhancers	Fetal Heart	heart
17	chr11:76320800-76322400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr11:76320800-76322400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
19	chr11:76320800-76322400	Enhancers	Duodenum Smooth Muscle	Duodenum
20	chr11:76320800-76322600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr11:76320800-76322600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr11:76320800-76322600	Enhancers	Adipose Nuclei	Adipose
23	chr11:76320800-76322600	Enhancers	Ovary	ovary
24	chr11:76320800-76322600	Enhancers	Rectal Smooth Muscle	rectum
25	chr11:76320800-76322800	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr11:76320800-76322800	Enhancers	Colon Smooth Muscle	Colon
27	chr11:76320800-76322800	Enhancers	Left Ventricle	heart
28	chr11:76321000-76322400	Enhancers	iPS-20b Cell Line	embryonic stem cell
29	chr11:76321000-76322400	Enhancers	Primary hematopoietic stem cells	blood
30	chr11:76321000-76322400	Enhancers	Brain Inferior Temporal Lobe	brain
31	chr11:76321000-76322400	Enhancers	Lung	lung
32	chr11:76321000-76322400	Enhancers	Stomach Smooth Muscle	stomach
33	chr11:76321000-76322600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr11:76321000-76322800	Enhancers	Right Ventricle	heart
35	chr11:76321000-76323200	Enhancers	Skeletal Muscle Female	skeletal muscle
36	chr11:76321000-76323600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr11:76321000-76323600	Enhancers	Placenta	Placenta
38	chr11:76321200-76325000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr11:76321200-76326600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr11:76321400-76325800	Weak transcription	Brain Hippocampus Middle	brain
41	chr11:76321400-76326800	Weak transcription	NH-A	brain
42	chr11:76321600-76322400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
43	chr11:76321600-76322600	Enhancers	Right Atrium	heart
44	chr11:76321800-76322600	Bivalent Enhancer	Primary B cells from peripheral blood	blood
45	chr11:76321800-76322600	Enhancers	Psoas Muscle	Psoas
46	chr11:76322000-76322400	Enhancers	Primary B cells from cord blood	blood
47	chr11:76322000-76322800	Enhancers	Spleen	Spleen
48	chr11:76322000-76326200	Weak transcription	Esophagus	oesophagus
49	chr11:76322200-76322400	Enhancers	ES-I3 Cell Line	embryonic stem cell
50	chr11:76322200-76322400	Enhancers	Brain Angular Gyrus	brain

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