Variant report

Variant	rs11236798
Chromosome Location	chr11:76310500-76310501
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:76309744..76311546-chr11:76315205..76316740,2	K562	blood:
2	chr11:76301219..76303049-chr11:76308621..76311229,3	K562	blood:
3	chr11:76309431..76311546-chr11:76315205..76316981,3	K562	blood:
4	chr11:76309441..76311518-chr11:76311642..76314549,3	K562	blood:
5	chr11:76309452..76310726-chr11:76391627..76392625,9	MCF-7	breast:

Variant related genes	Relation type
ENSG00000254755	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10793176	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10899237	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10899238	0.87[EUR][1000 genomes]
rs11236800	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11236806	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11236808	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11604124	0.89[ASN][1000 genomes]
rs11605443	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11827686	0.82[EUR][1000 genomes]
rs12575191	0.94[ASN][1000 genomes]
rs2186675	0.81[ASN][1000 genomes]
rs4438063	0.90[CHB][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs4485135	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4553390	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59753271	0.93[ASN][1000 genomes]
rs60413358	0.94[ASN][1000 genomes]
rs61380430	0.96[ASN][1000 genomes]
rs61566046	0.96[ASN][1000 genomes]
rs7942382	0.89[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs7943599	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7945414	0.93[ASN][1000 genomes]
rs7950468	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7951284	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9645696	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518717	chr11:76288937-76310976	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1043912	chr11:76301316-76439095	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1039451	chr11:76301316-76440221	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76303200-76313600	Weak transcription	Gastric	stomach
2	chr11:76303200-76315600	Weak transcription	Brain Angular Gyrus	brain
3	chr11:76303600-76315800	Weak transcription	Esophagus	oesophagus
4	chr11:76304200-76312600	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr11:76304200-76313200	Weak transcription	Stomach Mucosa	stomach
6	chr11:76304400-76313400	Weak transcription	Colonic Mucosa	Colon
7	chr11:76304400-76315600	Weak transcription	Pancreas	Pancrea
8	chr11:76305000-76312800	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr11:76307800-76311000	Enhancers	Fetal Muscle Trunk	muscle
10	chr11:76308800-76311000	Enhancers	Placenta	Placenta
11	chr11:76308800-76311400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr11:76309000-76310800	Enhancers	Fetal Muscle Leg	muscle
13	chr11:76309200-76311200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr11:76309200-76311400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr11:76309400-76310800	Enhancers	Fetal Stomach	stomach
16	chr11:76309400-76310800	Enhancers	NHLF	lung
17	chr11:76309400-76311000	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr11:76309400-76311000	Enhancers	NHDF-Ad	bronchial
19	chr11:76309600-76310600	Weak transcription	Lung	lung
20	chr11:76309600-76310800	Enhancers	Osteobl	bone
21	chr11:76309600-76311200	Enhancers	NH-A	brain
22	chr11:76309600-76313000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr11:76309600-76313200	Weak transcription	Left Ventricle	heart
24	chr11:76309800-76313400	Weak transcription	Fetal Thymus	thymus
25	chr11:76309800-76313400	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr11:76310000-76310600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr11:76310000-76310600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr11:76310000-76310600	Enhancers	Spleen	Spleen
29	chr11:76310000-76310800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr11:76310000-76310800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr11:76310000-76310800	Enhancers	Placenta Amnion	Placenta Amnion
32	chr11:76310000-76311000	Enhancers	HSMM	muscle
33	chr11:76310200-76310600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr11:76310200-76310600	Enhancers	Fetal Heart	heart
35	chr11:76310200-76310600	Enhancers	Sigmoid Colon	Sigmoid Colon
36	chr11:76310200-76310800	Enhancers	HUES6 Cell Line	embryonic stem cell
37	chr11:76310200-76310800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr11:76310200-76310800	Enhancers	Stomach Smooth Muscle	stomach
39	chr11:76310200-76311200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
40	chr11:76310200-76312800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr11:76310400-76310600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr11:76310400-76310600	Enhancers	Duodenum Mucosa	Duodenum
43	chr11:76310400-76310800	Bivalent Enhancer	HSMMtube	muscle
44	chr11:76310400-76311200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr11:76310400-76312800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr11:76310400-76313400	Weak transcription	Fetal Lung	lung
47	chr11:76310400-76313400	Weak transcription	Right Ventricle	heart
48	chr11:76310400-76315600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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