Variant report

Variant	rs10899238
Chromosome Location	chr11:76319536-76319537
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10793176	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10899237	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11236798	0.87[EUR][1000 genomes]
rs11236800	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11236806	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11236808	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11236809	0.84[ASN][1000 genomes]
rs11605443	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11827686	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12222706	0.95[ASN][1000 genomes]
rs12363012	0.88[AFR][1000 genomes]
rs2186675	0.90[ASN][1000 genomes]
rs4485135	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4553390	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58107908	0.89[AFR][1000 genomes]
rs7943599	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7950468	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7951284	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7951308	0.85[AFR][1000 genomes]
rs9645696	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043912	chr11:76301316-76439095	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv1039451	chr11:76301316-76440221	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	esv1810781	chr11:76311021-76464814	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76310600-76320200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr11:76311200-76320800	Weak transcription	NH-A	brain
3	chr11:76313800-76320000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr11:76314600-76327000	Weak transcription	Gastric	stomach
5	chr11:76316000-76321000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:76316200-76320800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr11:76316200-76321000	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr11:76316200-76321000	Weak transcription	Esophagus	oesophagus
9	chr11:76316200-76321800	Weak transcription	Pancreas	Pancrea
10	chr11:76316200-76322200	Weak transcription	Brain Angular Gyrus	brain
11	chr11:76316200-76325200	Weak transcription	Brain Anterior Caudate	brain
12	chr11:76316400-76326600	Weak transcription	Stomach Mucosa	stomach
13	chr11:76316800-76321000	Weak transcription	Brain Hippocampus Middle	brain
14	chr11:76316800-76321800	Weak transcription	Psoas Muscle	Psoas
15	chr11:76317000-76320600	Weak transcription	Fetal Heart	heart
16	chr11:76317000-76320800	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr11:76317000-76327200	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr11:76317400-76320800	Weak transcription	Colon Smooth Muscle	Colon
19	chr11:76317400-76320800	Weak transcription	Left Ventricle	heart
20	chr11:76317400-76320800	Weak transcription	Rectal Smooth Muscle	rectum
21	chr11:76317400-76321000	Weak transcription	Lung	lung
22	chr11:76317400-76321000	Weak transcription	Stomach Smooth Muscle	stomach
23	chr11:76317600-76321000	Weak transcription	Right Ventricle	heart
24	chr11:76317600-76321000	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr11:76317800-76320400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr11:76317800-76320600	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr11:76317800-76320800	Weak transcription	Ovary	ovary
28	chr11:76317800-76321000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr11:76317800-76321000	Weak transcription	Right Atrium	heart
30	chr11:76317800-76322000	Weak transcription	Spleen	Spleen
31	chr11:76317800-76322200	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr11:76318000-76320400	Weak transcription	Fetal Muscle Leg	muscle
33	chr11:76318000-76320800	Weak transcription	Adipose Nuclei	Adipose
34	chr11:76318000-76321000	Weak transcription	Placenta	Placenta
35	chr11:76318000-76325000	Weak transcription	NHDF-Ad	bronchial
36	chr11:76318000-76325200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr11:76318400-76320800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr11:76318600-76322000	Weak transcription	Primary B cells from cord blood	blood
39	chr11:76319200-76319600	ZNF genes & repeats	Fetal Intestine Small	intestine
40	chr11:76319400-76320600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr11:76319400-76320800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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