Variant report
| Variant | rs72934459 |
|---|---|
| Chromosome Location | chr1:70005180-70005181 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:69995565..69997784-chr1:70003938..70005840,2 | K562 | blood: | |
| 2 | chr1:70004208..70005978-chr1:70011642..70014290,3 | K562 | blood: | |
| 3 | chr1:70001323..70007506-chr1:70017692..70021149,7 | K562 | blood: | |
| 4 | chr1:69934461..69936977-chr1:70003421..70005202,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs34176344 | 1.00[AMR][1000 genomes] |
| rs57703717 | 1.00[AMR][1000 genomes] |
| rs58099669 | 1.00[AMR][1000 genomes] |
| rs58877660 | 1.00[AMR][1000 genomes] |
| rs59878053 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs60213737 | 1.00[AMR][1000 genomes] |
| rs72932392 | 1.00[AFR][1000 genomes] |
| rs72934430 | 1.00[AMR][1000 genomes] |
| rs72934431 | 1.00[AMR][1000 genomes] |
| rs72934438 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72934441 | 1.00[AMR][1000 genomes] |
| rs72934498 | 1.00[AMR][1000 genomes] |
| rs72936507 | 1.00[AMR][1000 genomes] |
| rs72936520 | 1.00[AMR][1000 genomes] |
| rs72936533 | 1.00[AMR][1000 genomes] |
| rs72936595 | 1.00[AMR][1000 genomes] |
| rs72938926 | 1.00[AMR][1000 genomes] |
| rs72938944 | 1.00[AMR][1000 genomes] |
| rs72938946 | 1.00[AMR][1000 genomes] |
| rs72938951 | 1.00[AMR][1000 genomes] |
| rs72938953 | 1.00[AMR][1000 genomes] |
| rs72938959 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949691 | chr1:69749722-70302201 | Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | esv3384194 | chr1:69885024-70275430 | Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | esv1805388 | chr1:69996616-70019811 | Enhancers Weak transcription Flanking Active TSS Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | esv1807543 | chr1:69996616-70019811 | Enhancers Active TSS Weak transcription Flanking Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 5 | esv1809423 | chr1:69996616-70019811 | Weak transcription Active TSS Flanking Active TSS Enhancers | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 6 | esv1810945 | chr1:69996616-70019811 | Enhancers Flanking Active TSS Weak transcription Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:70004400-70006400 | Enhancers | K562 | blood |
