Variant report

Variant	rs72938959
Chromosome Location	chr1:70151207-70151208
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs34176344	1.00[AMR][1000 genomes]
rs57703717	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58099669	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58877660	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59878053	1.00[AMR][1000 genomes]
rs60213737	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72934430	1.00[AMR][1000 genomes]
rs72934431	1.00[AMR][1000 genomes]
rs72934438	1.00[AMR][1000 genomes]
rs72934441	1.00[AMR][1000 genomes]
rs72934459	1.00[AMR][1000 genomes]
rs72934498	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72934502	1.00[AFR][1000 genomes]
rs72936507	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72936520	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72936533	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72936588	1.00[AFR][1000 genomes]
rs72936595	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72938926	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72938944	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72938946	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72938951	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72938953	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949691	chr1:69749722-70302201	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3384194	chr1:69885024-70275430	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830126	chr1:70014879-70167979	Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1010921	chr1:70148694-70182578	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:70137200-70167400	Weak transcription	Fetal Brain Male	brain
2	chr1:70137400-70160400	Weak transcription	Fetal Brain Female	brain
3	chr1:70138600-70155600	Weak transcription	Brain Anterior Caudate	brain
4	chr1:70146200-70154000	Weak transcription	Brain Germinal Matrix	brain
5	chr1:70147800-70162400	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr1:70149200-70152600	Weak transcription	Fetal Stomach	stomach
7	chr1:70150600-70151600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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