Variant report

Variant	rs72936588
Chromosome Location	chr1:70108961-70108962
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10889851	1.00[AMR][1000 genomes]
rs11209537	1.00[AMR][1000 genomes]
rs11209538	1.00[AMR][1000 genomes]
rs11209540	1.00[AMR][1000 genomes]
rs12062248	1.00[AMR][1000 genomes]
rs12072842	1.00[AMR][1000 genomes]
rs12088569	1.00[AMR][1000 genomes]
rs12095217	1.00[AMR][1000 genomes]
rs12096120	1.00[AMR][1000 genomes]
rs57703717	0.86[AFR][1000 genomes]
rs58099669	0.86[AFR][1000 genomes]
rs58877660	0.86[AFR][1000 genomes]
rs60213737	0.86[AFR][1000 genomes]
rs72932348	1.00[AMR][1000 genomes]
rs72934498	1.00[AFR][1000 genomes]
rs72934502	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72936507	0.86[AFR][1000 genomes]
rs72936520	0.86[AFR][1000 genomes]
rs72936533	0.86[AFR][1000 genomes]
rs72936595	1.00[AFR][1000 genomes]
rs72938926	1.00[AFR][1000 genomes]
rs72938944	1.00[AFR][1000 genomes]
rs72938946	1.00[AFR][1000 genomes]
rs72938951	1.00[AFR][1000 genomes]
rs72938959	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949691	chr1:69749722-70302201	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3384194	chr1:69885024-70275430	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830126	chr1:70014879-70167979	Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:70106200-70126000	Weak transcription	Brain Cingulate Gyrus	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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