Variant report

Variant	rs58099669
Chromosome Location	chr1:70047372-70047373
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs34176344	1.00[AMR][1000 genomes]
rs57703717	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58877660	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59878053	1.00[AMR][1000 genomes]
rs60213737	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72934430	1.00[AMR][1000 genomes]
rs72934431	1.00[AMR][1000 genomes]
rs72934438	1.00[AMR][1000 genomes]
rs72934441	1.00[AMR][1000 genomes]
rs72934459	1.00[AMR][1000 genomes]
rs72934498	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72934502	0.86[AFR][1000 genomes]
rs72936507	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72936520	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72936533	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72936588	0.86[AFR][1000 genomes]
rs72936595	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72938926	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72938944	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72938946	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72938951	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72938953	1.00[AMR][1000 genomes]
rs72938959	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949691	chr1:69749722-70302201	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3384194	chr1:69885024-70275430	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830126	chr1:70014879-70167979	Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:70035600-70053200	Weak transcription	Pancreas	Pancrea
2	chr1:70039800-70051400	Weak transcription	Brain Cingulate Gyrus	brain
3	chr1:70042400-70049400	Weak transcription	Fetal Brain Male	brain
4	chr1:70046400-70048600	Enhancers	Fetal Brain Female	brain
5	chr1:70047000-70047400	Weak transcription	Brain Angular Gyrus	brain
6	chr1:70047000-70049200	Weak transcription	Brain Anterior Caudate	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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