Variant report

Variant	rs72939655
Chromosome Location	chr3:69459942-69459943
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:69373623..69374172-chr3:69458720..69460070,3	MCF-7	breast:
2	chr3:69458125..69461100-chr3:69465015..69466621,2	K562	blood:
3	chr3:69373310..69374161-chr3:69459043..69460191,4	MCF-7	breast:
4	chr3:69451514..69454199-chr3:69456879..69459994,4	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10510974	0.93[AFR][1000 genomes]
rs11916346	0.85[AFR][1000 genomes]
rs11917290	0.85[AFR][1000 genomes]
rs11919150	0.85[AFR][1000 genomes]
rs11921571	0.95[AFR][1000 genomes]
rs11928996	0.82[AFR][1000 genomes]
rs17005815	0.82[AFR][1000 genomes]
rs17005821	0.85[AFR][1000 genomes]
rs17005826	0.85[AFR][1000 genomes]
rs17005829	0.96[AFR][1000 genomes]
rs17005831	0.85[AFR][1000 genomes]
rs17005837	0.82[AFR][1000 genomes]
rs17005844	0.81[AFR][1000 genomes]
rs17005849	0.96[AFR][1000 genomes]
rs72937887	0.82[AFR][1000 genomes]
rs72937889	0.82[AFR][1000 genomes]
rs72937895	0.93[AFR][1000 genomes]
rs72937901	0.84[AFR][1000 genomes]
rs72937902	0.85[AFR][1000 genomes]
rs72939706	0.85[AFR][1000 genomes]
rs72939709	0.85[AFR][1000 genomes]
rs72939711	0.85[AFR][1000 genomes]
rs72939718	0.85[AFR][1000 genomes]
rs72939723	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007730	chr3:69355932-69730587	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2760780	chr3:69413876-69513947	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv3426797	chr3:69433086-69777229	Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69450600-69461400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr3:69455800-69461400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr3:69457000-69470800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr3:69457400-69460400	Enhancers	Brain Inferior Temporal Lobe	brain
5	chr3:69458200-69461400	Enhancers	HSMM	muscle
6	chr3:69458600-69460600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr3:69458600-69460600	Enhancers	HUVEC	blood vessel
8	chr3:69458800-69460200	Weak transcription	HSMMtube	muscle
9	chr3:69459200-69461400	Enhancers	Muscle Satellite Cultured Cells	--
10	chr3:69459400-69460600	Enhancers	Hela-S3	cervix
11	chr3:69459400-69461000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr3:69459400-69461200	Enhancers	NHDF-Ad	bronchial
13	chr3:69459400-69461400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr3:69459600-69460200	Enhancers	Brain Anterior Caudate	brain
15	chr3:69459600-69460600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr3:69459600-69460800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr3:69459600-69460800	Enhancers	HMEC	breast
18	chr3:69459600-69461600	Weak transcription	Fetal Brain Female	brain
19	chr3:69459600-69462400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr3:69459600-69462400	Weak transcription	Brain Hippocampus Middle	brain
21	chr3:69459600-69462600	Weak transcription	Fetal Lung	lung
22	chr3:69459600-69462800	Weak transcription	Brain Angular Gyrus	brain
23	chr3:69459600-69462800	Weak transcription	Brain Substantia Nigra	brain
24	chr3:69459600-69463200	Weak transcription	Brain Cingulate Gyrus	brain
25	chr3:69459600-69463200	Weak transcription	Fetal Stomach	stomach
26	chr3:69459600-69463600	Weak transcription	Fetal Thymus	thymus
27	chr3:69459600-69463800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr3:69459600-69479600	Weak transcription	Monocytes-CD14+_RO01746	blood
29	chr3:69459800-69460800	Enhancers	NHEK	skin
30	chr3:69459800-69461800	Weak transcription	Fetal Brain Male	brain
31	chr3:69459800-69463200	Weak transcription	Dnd41	blood
32	chr3:69459800-69463400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr3:69459800-69469600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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