Variant report
| Variant | rs72943286 |
|---|---|
| Chromosome Location | chr1:70416982-70416983 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:70414870..70417242-chr1:70419207..70421532,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs10493462 | 1.00[EUR][1000 genomes] |
| rs12079486 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12084223 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17131144 | 1.00[EUR][1000 genomes] |
| rs17131147 | 1.00[EUR][1000 genomes] |
| rs17131149 | 1.00[EUR][1000 genomes] |
| rs17131153 | 1.00[EUR][1000 genomes] |
| rs17131173 | 1.00[EUR][1000 genomes] |
| rs17131175 | 1.00[EUR][1000 genomes] |
| rs17131185 | 1.00[EUR][1000 genomes] |
| rs17131194 | 1.00[EUR][1000 genomes] |
| rs17131195 | 1.00[EUR][1000 genomes] |
| rs17131197 | 1.00[EUR][1000 genomes] |
| rs17131198 | 1.00[EUR][1000 genomes] |
| rs58361762 | 1.00[EUR][1000 genomes] |
| rs6681058 | 1.00[EUR][1000 genomes] |
| rs72915800 | 1.00[EUR][1000 genomes] |
| rs72917803 | 1.00[EUR][1000 genomes] |
| rs72917809 | 1.00[EUR][1000 genomes] |
| rs72926213 | 1.00[EUR][1000 genomes] |
| rs72929205 | 1.00[EUR][1000 genomes] |
| rs72943268 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72943277 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72945223 | 1.00[EUR][1000 genomes] |
| rs72945229 | 1.00[EUR][1000 genomes] |
| rs72945240 | 1.00[EUR][1000 genomes] |
| rs970938 | 1.00[EUR][1000 genomes] |
| rs970939 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv428466 | chr1:70306638-70455357 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv531879 | chr1:70386455-70644617 | Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 6 gene(s) | inside rSNPs | diseases |
| 3 | nsv947492 | chr1:70414280-70420191 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:70402000-70419800 | Weak transcription | Fetal Brain Male | brain |
