Variant report

Variant	rs17131144
Chromosome Location	chr1:70503304-70503305
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10493462	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12079486	1.00[EUR][1000 genomes]
rs12084223	1.00[EUR][1000 genomes]
rs17131147	1.00[EUR][1000 genomes]
rs17131149	1.00[EUR][1000 genomes]
rs17131153	1.00[EUR][1000 genomes]
rs17131173	1.00[EUR][1000 genomes]
rs17131175	1.00[EUR][1000 genomes]
rs17131185	1.00[EUR][1000 genomes]
rs17131194	1.00[EUR][1000 genomes]
rs17131195	1.00[EUR][1000 genomes]
rs17131197	1.00[EUR][1000 genomes]
rs17131198	1.00[EUR][1000 genomes]
rs2068176	1.00[EUR][1000 genomes]
rs57557771	1.00[EUR][1000 genomes]
rs58361762	1.00[EUR][1000 genomes]
rs59352671	1.00[EUR][1000 genomes]
rs6681058	1.00[EUR][1000 genomes]
rs72915800	1.00[EUR][1000 genomes]
rs72917803	1.00[EUR][1000 genomes]
rs72917809	1.00[EUR][1000 genomes]
rs72926213	1.00[EUR][1000 genomes]
rs72929205	1.00[EUR][1000 genomes]
rs72929247	1.00[EUR][1000 genomes]
rs72929251	1.00[EUR][1000 genomes]
rs72943268	1.00[EUR][1000 genomes]
rs72943277	1.00[EUR][1000 genomes]
rs72943286	1.00[EUR][1000 genomes]
rs72945223	1.00[EUR][1000 genomes]
rs72945229	1.00[EUR][1000 genomes]
rs72945240	1.00[EUR][1000 genomes]
rs74088023	1.00[EUR][1000 genomes]
rs74088028	1.00[EUR][1000 genomes]
rs970938	1.00[EUR][1000 genomes]
rs970939	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531879	chr1:70386455-70644617	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv461795	chr1:70475794-70551339	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv546453	chr1:70475794-70551339	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv461806	chr1:70494216-70566981	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv546454	chr1:70494216-70566981	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:70464800-70509000	Weak transcription	Brain Angular Gyrus	brain
2	chr1:70478000-70503800	Weak transcription	Brain Cingulate Gyrus	brain
3	chr1:70479400-70515600	Weak transcription	Fetal Brain Male	brain
4	chr1:70479800-70503800	Weak transcription	Fetal Muscle Trunk	muscle
5	chr1:70485200-70503800	Weak transcription	Brain Germinal Matrix	brain
6	chr1:70485600-70503800	Weak transcription	Brain Anterior Caudate	brain
7	chr1:70488000-70503800	Weak transcription	Fetal Muscle Leg	muscle
8	chr1:70500200-70506200	Weak transcription	Brain Hippocampus Middle	brain
9	chr1:70500600-70503800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr1:70500600-70503800	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr1:70500600-70503800	Weak transcription	Pancreas	Pancrea
12	chr1:70501000-70509400	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr1:70501400-70505400	Strong transcription	Fetal Brain Female	brain
14	chr1:70503200-70503800	Weak transcription	Fetal Stomach	stomach
15	chr1:70503200-70504600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr1:70503200-70505000	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links