Variant report

Variant	rs72943804
Chromosome Location	chr4:147869351-147869352
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr4:147869339-147869389	NHDF-neo	bronchial:	n/a
2	chr4:147869339-147869389	MCF-7	breast:	n/a
3	chr4:147869339-147869389	HIPEpiC	eye:	n/a
4	chr4:147869339-147869389	AoSMC	blood vessel:	n/a
5	chr4:147869339-147869389	HL-60	blood:	n/a
6	chr4:147869339-147869389	NT2-D1	testis:	n/a
7	chr4:147869339-147869389	HRPEpiC	eye:	n/a
8	chr4:147869339-147869389	SK-N-MC	brain:	n/a
9	chr4:147869339-147869389	ovcar-3	ovarian:	n/a
10	chr4:147869339-147869389	RPTEC	kidney:	n/a
11	chr4:147869339-147869389	HMEC	breast:	n/a
12	chr4:147869339-147869389	AG09319	gingival:	n/a
13	chr4:147869339-147869389	NH-A	brain:	n/a
14	chr4:147869339-147869389	HRE	kidney:	n/a
15	chr4:147869339-147869389	NHBE	bronchial:	n/a
16	chr4:147869339-147869389	AG04449	skin:	fetal
17	chr4:147869339-147869389	Jurkat	blood:	n/a
18	chr4:147869339-147869389	Hepatocyte	liver:	n/a
19	chr4:147869339-147869389	ProgFib	skin:	n/a
20	chr4:147869339-147869389	HPAEpiC	pulmonary alveolar:	n/a
21	chr4:147869339-147869389	PFSK-1	brain:	n/a
22	chr4:147869339-147869389	HCT-116	colon:	n/a
23	chr4:147869339-147869389	BE2_C	brain:	n/a
24	chr4:147869339-147869389	U87	brain:	n/a
25	chr4:147869339-147869389	HEEpiC	esophagus:	n/a
26	chr4:147869339-147869389	T-47D	breast:	n/a
27	chr4:147869339-147869389	HAEpiC	amniotic membrane:	n/a
28	chr4:147869339-147869389	GM12892	blood:	n/a
29	chr4:147869339-147869389	LNCaP	prostate:	n/a
30	chr4:147869339-147869389	GM12891	blood:	n/a
31	chr4:147869339-147869389	HEK293	kidney:	embryo
32	chr4:147869339-147869389	BJ	skin:	n/a
33	chr4:147869339-147869389	SAEC	small airway:	n/a
34	chr4:147869339-147869389	HNPCEpiC	eye:	n/a
35	chr4:147869339-147869389	H1-hESC	embryonic stem cell:	embryo
36	chr4:147869339-147869389	HCM	heart:	n/a
37	chr4:147869339-147869389	PANC-1	pancreas:	n/a
38	chr4:147869339-147869389	CMK	blood:	n/a
39	chr4:147869339-147869389	HRCEpiC	kidney:	n/a
40	chr4:147869339-147869389	A549	lung:	n/a
41	chr4:147869339-147869389	HCPEpiC	choroid plexus:	n/a
42	chr4:147869339-147869389	SK-N-SH	brain:	n/a
43	chr4:147869339-147869389	HUVEC	blood vessel:	n/a
44	chr4:147869339-147869389	MCF10A-Er-Src	breast:	n/a
45	chr4:147869339-147869389	GM06990	blood:	n/a
46	chr4:147869339-147869389	AG04450	lung:	fetal
47	chr4:147869339-147869389	IMR90	lung:	fetal
48	chr4:147869339-147869389	SK-N-SH_RA	brain:	n/a
49	chr4:147869339-147869389	ECC-1	luminal epithelium:	n/a
50	chr4:147869339-147869389	AG09309	skin:	n/a

No data

Variant related genes	Relation type
TTC29	CpG island

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2043703	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2304535	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72943833	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72960366	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72960390	0.88[AFR][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:147867600-147880600	Weak transcription	Pancreas	Pancrea
2	chr4:147867800-147869600	Enhancers	Primary T helper naive cells from peripheral blood	blood
3	chr4:147867800-147869600	Enhancers	Primary T killer memory cells from peripheral blood	blood
4	chr4:147868200-147872600	Weak transcription	Psoas Muscle	Psoas
5	chr4:147868600-147869400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr4:147869200-147869400	Enhancers	Thymus	Thymus

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