Variant report

Variant	rs72943833
Chromosome Location	chr4:147880042-147880043
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2043703	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2304535	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72943804	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72960366	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72960390	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1826357	chr4:147876484-147900981	Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:147867600-147880600	Weak transcription	Pancreas	Pancrea
2	chr4:147877600-147882600	Enhancers	Hela-S3	cervix
3	chr4:147878600-147880800	Weak transcription	HMEC	breast
4	chr4:147879000-147880600	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr4:147879200-147880400	Weak transcription	NH-A	brain
6	chr4:147879200-147880600	Weak transcription	Osteobl	bone
7	chr4:147879200-147880800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr4:147880000-147881200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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