Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:84928129..84930451-chr1:84943094..84944929,2	MCF-7	breast:
2	chr1:78469143..78471387-chr1:84926458..84928901,2	K562	blood:

Variant related genes	Relation type
ENSG00000273338	Chromatin interaction
ENSG00000162616	Chromatin interaction

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1395418	0.96[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs17365681	0.96[EUR][1000 genomes]
rs17365723	0.96[EUR][1000 genomes]
rs17374048	0.98[EUR][1000 genomes]
rs17374753	1.00[EUR][1000 genomes]
rs17540101	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs312403	0.96[EUR][1000 genomes]
rs41284589	0.92[EUR][1000 genomes]
rs41284591	0.96[EUR][1000 genomes]
rs41284599	0.92[EUR][1000 genomes]
rs41293029	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs41302796	0.96[EUR][1000 genomes]
rs4512665	0.96[EUR][1000 genomes]
rs4907081	1.00[EUR][1000 genomes]
rs72946368	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72946390	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72948408	1.00[EUR][1000 genomes]
rs72948410	0.81[AFR][1000 genomes]
rs72948421	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72948483	0.92[AFR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830437	chr1:84837524-85001269	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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